View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15718_high_15 (Length: 431)

Name: NF15718_high_15
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15718_high_15
NF15718_high_15
[»] chr4 (9 HSPs)
chr4 (1-414)||(7605974-7606387)
chr4 (1-321)||(7636895-7637218)
chr4 (1-319)||(7615083-7615401)
chr4 (28-345)||(7656132-7656446)
chr4 (171-319)||(7628521-7628669)
chr4 (1-96)||(7633443-7633541)
chr4 (1-65)||(7628708-7628772)
chr4 (108-143)||(39097703-39097738)
chr4 (109-155)||(39088014-39088060)
[»] chr7 (5 HSPs)
chr7 (34-407)||(8941738-8942110)
chr7 (1-319)||(8936069-8936378)
chr7 (1-321)||(8913561-8913877)
chr7 (1-96)||(8919086-8919184)
chr7 (1-40)||(8938845-8938884)
[»] chr3 (2 HSPs)
chr3 (121-302)||(40147453-40147634)
chr3 (121-280)||(8102327-8102486)
[»] chr6 (2 HSPs)
chr6 (112-316)||(6500335-6500539)
chr6 (218-272)||(11968807-11968861)
[»] scaffold0190 (1 HSPs)
scaffold0190 (113-162)||(4452-4501)
[»] chr8 (1 HSPs)
chr8 (108-162)||(15745016-15745070)


Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 7606387 - 7605974
Alignment:
Q  1 attgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7606387 attgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttca 7606288  T
Q  101 tatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7606287 tatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgt 7606188  T
Q  201 aaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7606187 aaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggat 7606088  T
Q  301 gtcgtgaccaactaatgcagcttcaaggtttgtaaaatcgatttgttagcatatttgtccaaatgcttaaatttgtattttggatataactatgaataac 400  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  7606087 gtcgtgaccaactaatgcggcttcaaggtttgtaaaatcgatttgttagcatatttgtccaaatgcttaaatttgtattttggatataactatgaataag 7605988  T
Q  401 tttatgacattcaa 414  Q
    | |||||| |||||    
T  7605987 tgtatgacgttcaa 7605974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 7637218 - 7636895
Alignment:
Q  1 attgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctag---catgtccaataataatt 97  Q
    |||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||| ||||| ||||||    ||||   || |||||||    
T  7637218 attgcttcacacactgatgagaagttgaagaatcattacgagtcttggttaagaaatccaagcttttttaggcttgctaagaacatggtaaaaaataatt 7637119  T
Q  98 tcatatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaat 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | |||||||||||||||||||||||||||||| |    
T  7637118 tcatatccattagtagttctccatggtttgatgtttatggtaatgattttggatggggaaagcctctggcagttcgtagtggatataaaataaatggact 7637019  T
Q  198 tgtaaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatg 297  Q
    | | |  |||||||| |||||||||||||||||||| ||||||||||| |||||||||    || ||||||||| |||||||| ||||||  ||||||||    
T  7637018 tattacggtatttgccggaatagaagaaggtagtatagaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatgaccccaatttcatg 7636919  T
Q  298 gatgtcgtgaccaactaatgcagc 321  Q
    ||||| ||| ||||||||||||||    
T  7636918 gatgttgtgtccaactaatgcagc 7636895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 7615401 - 7615083
Alignment:
Q  1 attgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttca 100  Q
    |||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||  | ||| |||| | || ||||||||||    
T  7615401 attgtttcacacactgatgagaagttgaagaatcactacgagtcttggttaagaaatccaagctttgctaggtatcctaacatggcaaaaaataatttca 7615302  T
Q  101 tatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgt 200  Q
    || ||||||| |||||||| |||||||||||||||||||||||||| || |||||||| ||| | |||||||||||||||||||||  ||||||| || |    
T  7615301 tagccattagcagttctccgtggtttgatgtttatggtaatgattttggttggggaaagcctgtggcagttcgtagtggatataaaggaaatggacttat 7615202  T
Q  201 aaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggat 300  Q
     |  || |||||||||||||||||||||||||| || |||||||| |||||| |  |  || |||||||||||||||||| |||||| || |||||||||    
T  7615201 tacggtttttgctggaatagaagaaggtagtatagatcttcaagtttgtctttcacatgagattttggaggcaatgggaaatgaccctcaattcatggat 7615102  T
Q  301 gtcgtgaccaactaatgca 319  Q
    || | | ||||||||||||    
T  7615101 gttgcgtccaactaatgca 7615083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 28 - 345
Target Start/End: Original strand, 7656132 - 7656446
Alignment:
Q  28 aagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttcatatccattagtagttctccatggtttg 127  Q
    |||||| | |||||||| ||||| |||||||||| |||| ||||| ||| |||| ||  || ||| |||||  |  ||||||| |||||||||  |||||    
T  7656132 aagaatgattatgagtcatggttgagaaatccaaactttattaggcttgatagcttgagcactaagaattttttggccattagcagttctccaaagtttg 7656231  T
Q  128 atgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgtaaatgtatttgctggaatagaagaagg 227  Q
    ||||||||||||||||||| ||||||||||| ||| | ||||||||||||||| |||||| ||||||||| ||   ||  |||||||||||||||||||     
T  7656232 atgtttatggtaatgattttggatggggaaagcctgtggcagttcgtagtggaaataaaacaaatggaatggtttgtgcctttgctggaatagaagaagc 7656331  T
Q  228 tagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggatgtcgtgaccaactaatgcagcttcaag 327  Q
    ||| |||||||||||||| ||||||||||||||| |||||||||||||||||| ||| ||  | ||||||||| | ||   ||||||||||||| |||||    
T  7656332 tagcattgaccttcaagtgtgtcttccttacaagattttggaggcaatgggaaatgatcctgagttcatggatatggt---caactaatgcagcgtcaag 7656428  T
Q  328 gtttgtaaaatcgatttg 345  Q
     |||| ||| | ||||||    
T  7656429 atttgaaaacttgatttg 7656446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 171 - 319
Target Start/End: Complemental strand, 7628669 - 7628521
Alignment:
Q  171 tcgtagtggatataaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggag 270  Q
    |||||||||||||||||| || ||| |||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||| || ||||||||    
T  7628669 tcgtagtggatataaaatgaaaggacttgttaatgtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggag 7628570  T
Q  271 gcaatgggaagtgacccacatttcatggatgtcgtgaccaactaatgca 319  Q
    |||||||||| |||||| || ||  ||||||| ||| ||||||||||||    
T  7628569 gcaatgggaaatgaccctcaatttgtggatgttgtgtccaactaatgca 7628521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 7633541 - 7633443
Alignment:
Q  1 attgcttcacacacggatgagaagttgaagaatcactatgagtcttggtta---agaaatccaagctttgttagggttgctagcatgtccaataataat 96  Q
    ||||||||||||||  |||||||| |||| |||||||||||||||||||||   ||||||||| ||||||||||||||||||||||| |||||||||||    
T  7633541 attgcttcacacactaatgagaagctgaaaaatcactatgagtcttggttaagaagaaatccaggctttgttagggttgctagcatgaccaataataat 7633443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 7628772 - 7628708
Alignment:
Q  1 attgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctt 65  Q
    |||||||||||||| ||||||| ||||||||||||||| ||||||||||||| ||||||||||||    
T  7628772 attgcttcacacactgatgagatgttgaagaatcactacgagtcttggttaaaaaatccaagctt 7628708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 143
Target Start/End: Complemental strand, 39097738 - 39097703
Alignment:
Q  108 tagtagttctccatggtttgatgtttatggtaatga 143  Q
    ||||||||||||| ||||||||||||||||||||||    
T  39097738 tagtagttctccaaggtttgatgtttatggtaatga 39097703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 39088060 - 39088014
Alignment:
Q  109 agtagttctccatggtttgatgtttatggtaatgatttcggatgggg 155  Q
    |||||||||||| ||||||||||||||| ||||||||| || |||||    
T  39088060 agtagttctccaaggtttgatgtttatgataatgattttggttgggg 39088014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 34 - 407
Target Start/End: Original strand, 8941738 - 8942110
Alignment:
Q  34 cactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttcatatccattagtagttctccatggtttgatgttt 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8941738 cactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttcttatccattagtagttctccatggtttgatgttt 8941837  T
Q  134 atggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtat 233  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8941838 atggtaatgatttcggatggggaaaacctatagcagt-cgtagtggatataaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtat 8941936  T
Q  234 tgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggatgtcgtgaccaactaatgcagcttcaaggtttgt 333  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  8941937 tgaccttcaagtatgtcttccttacgaggttttggaggcaatgggaagtgacccacgtttcatggatgtcgtgaccaaataatgcagcttcaaggtttgt 8942036  T
Q  334 aaaatcgatttgttagcatatttgtccaaatgcttaaatttgtattttggatataactatgaataactttatga 407  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8942037 aaaatcgatttgttagcatatttgtccagatgcttaaatttgtattttggatataactatgaataactttatga 8942110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 8936069 - 8936378
Alignment:
Q  1 attgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttca 100  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||   ||      || |||| | || || |||||||    
T  8936069 attgctttacacactgatgagaagttgaagaatcactatgagtcttggttaagaaatccaagcttt---ag------taacatgccaaaaaagaatttca 8936159  T
Q  101 tatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgt 200  Q
    || ||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||| |||||| |||| |||||||||||  ||||||| || |    
T  8936160 tagccattagcagttctccgtggtttgatgtttatggtaatgattttggatggggaaagcctgtagcaggtcgtggtggatataaagcaaatggacttat 8936259  T
Q  201 aaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggat 300  Q
     |  |||||||| |||||||||||||||||||||||||||||||| |||||||| ||  || |||||||||||||||||| |||||| || |||||||||    
T  8936260 tacagtatttgccggaatagaagaaggtagtattgaccttcaagtttgtcttccatatgagattttggaggcaatgggaaatgaccctcaattcatggat 8936359  T
Q  301 gtcgtgaccaactaatgca 319  Q
    || | | ||||||||||||    
T  8936360 gttgcgtccaactaatgca 8936378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 8913561 - 8913877
Alignment:
Q  1 attgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctag---catgtccaataataatt 97  Q
    |||||||||||| | || ||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||    ||||   || | |||||    
T  8913561 attgcttcacacgctgacgagaagttgaagaatcattacgagtcttggttaagaaatccaagctttgttaggcttgctaagaacatggtaaaaactaatt 8913660  T
Q  98 tcatatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaat 197  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||       ||||||| ||| | |||||||||||||||||||||||||||||| |    
T  8913661 tcatatccattagtagttctccatagtttgatgtttatggtaatgat-------ggggaaagcctgtggcagttcgtagtggatataaaataaatggact 8913753  T
Q  198 tgtaaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatg 297  Q
    | | |  |||||||  |||||||||||||||| ||| ||||||||||| |||||||||    || ||||||||| |||||||| ||||||  ||||||||    
T  8913754 tattacagtatttgtcggaatagaagaaggtattatagaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatgaccccaatttcatg 8913853  T
Q  298 gatgtcgtgaccaactaatgcagc 321  Q
    ||||| ||| ||||||||||||||    
T  8913854 gatgttgtgtccaactaatgcagc 8913877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 8919086 - 8919184
Alignment:
Q  1 attgcttcacacacggatgagaagttgaagaatcactatgagtcttggtt---aagaaatccaagctttgttagggttgctagcatgtccaataataat 96  Q
    ||||||||||||||  |||||||| |||| ||||||||||||||||||||   ||||||||||  |||||||||||||||||||||| |||||||||||    
T  8919086 attgcttcacacactaatgagaagctgaaaaatcactatgagtcttggttaagaagaaatccagactttgttagggttgctagcatgaccaataataat 8919184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 8938845 - 8938884
Alignment:
Q  1 attgcttcacacacggatgagaagttgaagaatcactatg 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8938845 attgcttcacacacggatgagaagttgaagaatcactatg 8938884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 121 - 302
Target Start/End: Original strand, 40147453 - 40147634
Alignment:
Q  121 tggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgtaaatgtatttgctggaatag 220  Q
    |||||||||||||||||||||||||| ||||||||| ||||| | |||||||| |||||| ||||||||| ||||||  | | |||||||||||||| ||    
T  40147453 tggtttgatgtttatggtaatgattttggatggggagaacctgtggcagttcgcagtggaaataaaataagtggaatgattactgtatttgctggaaaag 40147552  T
Q  221 aagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggatgt 302  Q
    |||||||||| || ||| ||||||| ||||||||| ||||| |||||||||||||||||| |||||   | |||||||||||    
T  40147553 aagaaggtagcatggactttcaagtgtgtcttcctcacaagattttggaggcaatgggaaatgaccatgacttcatggatgt 40147634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 121 - 280
Target Start/End: Complemental strand, 8102486 - 8102327
Alignment:
Q  121 tggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgtaaatgtatttgctggaatag 220  Q
    ||||||||||||||||| ||| |||| ||||||||||||||  | |||||||| |||||| |||||  || |||| |  |   |||||||||||||||||    
T  8102486 tggtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaatag 8102387  T
Q  221 aagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaa 280  Q
    ||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||    
T  8102386 aagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaa 8102327  T

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Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 112 - 316
Target Start/End: Complemental strand, 6500539 - 6500335
Alignment:
Q  112 agttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgtaaatgtatttg 211  Q
    ||||| || ||||||||| |||||||||||||||| |||||||| |||||  | ||| |||| |||| | |||||||| |||| || || | ||||||||    
T  6500539 agttccccgtggtttgatatttatggtaatgattttggatgggggaaacccgtggcatttcgcagtgtaaataaaatagatggtatggttagtgtatttg 6500440  T
Q  212 ctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggatgtcgtgaccaa 311  Q
    |||||| |||| |||||||||| ||||||||||| |||||||||||||||  |||||| |||||| |   ||||||  ||||||||||||  ||| ||||    
T  6500439 ctggaaaagaataaggtagtatagaccttcaagtttgtcttccttacaagactttggaagcaatgagttatgaccctaatttcatggatgctgtgtccaa 6500340  T
Q  312 ctaat 316  Q
    |||||    
T  6500339 ctaat 6500335  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 11968861 - 11968807
Alignment:
Q  218 tagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggc 272  Q
    |||||||||||||||| ||| || |||| ||||||||||||||| ||||||||||    
T  11968861 tagaagaaggtagtatagactttgaagtgtgtcttccttacaagattttggaggc 11968807  T

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Target: scaffold0190 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 4501 - 4452
Alignment:
Q  113 gttctccatggtttgatgtttatggtaatgatttcggatggggaaaacct 162  Q
    ||||||| |||||||||||||||||||||||||| || ||||||||||||    
T  4501 gttctccttggtttgatgtttatggtaatgattttggttggggaaaacct 4452  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 15745016 - 15745070
Alignment:
Q  108 tagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacct 162  Q
    ||||||||| || ||||||||||||||||| |||||||| || ||||||||||||    
T  15745016 tagtagttcaccctggtttgatgtttatggcaatgattttggttggggaaaacct 15745070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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