View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15718_high_17 (Length: 400)

Name: NF15718_high_17
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15718_high_17
NF15718_high_17
[»] chr7 (5 HSPs)
chr7 (20-400)||(8759546-8759927)
chr7 (140-325)||(11797887-11798073)
chr7 (330-400)||(25470731-25470801)
chr7 (329-389)||(4902641-4902701)
chr7 (335-389)||(23402045-23402099)
[»] chr4 (12 HSPs)
chr4 (175-325)||(8015191-8015342)
chr4 (330-397)||(14246505-14246572)
chr4 (330-400)||(37795140-37795210)
chr4 (330-389)||(5914938-5914997)
chr4 (338-388)||(22721927-22721977)
chr4 (338-399)||(9743898-9743959)
chr4 (330-395)||(47073065-47073130)
chr4 (330-389)||(28292363-28292422)
chr4 (330-371)||(3042999-3043040)
chr4 (330-371)||(4205364-4205405)
chr4 (322-371)||(7703889-7703938)
chr4 (330-371)||(36493479-36493520)
[»] chr3 (11 HSPs)
chr3 (329-400)||(54607955-54608026)
chr3 (332-400)||(5125529-5125597)
chr3 (329-400)||(11019787-11019858)
chr3 (260-325)||(5242530-5242595)
chr3 (329-389)||(42663989-42664049)
chr3 (332-382)||(29923035-29923085)
chr3 (332-382)||(29972188-29972238)
chr3 (329-376)||(36689781-36689829)
chr3 (330-400)||(48154355-48154425)
chr3 (331-382)||(23165291-23165342)
chr3 (330-371)||(20373027-20373068)
[»] scaffold0312 (1 HSPs)
scaffold0312 (326-394)||(8205-8273)
[»] chr1 (8 HSPs)
chr1 (326-394)||(422299-422367)
chr1 (330-400)||(28013013-28013083)
chr1 (330-400)||(7843095-7843165)
chr1 (331-382)||(42663232-42663283)
chr1 (330-396)||(26970835-26970901)
chr1 (331-389)||(10598206-10598264)
chr1 (325-389)||(5500674-5500738)
chr1 (329-389)||(47555076-47555136)
[»] chr2 (7 HSPs)
chr2 (330-397)||(6357134-6357201)
chr2 (335-397)||(59486-59548)
chr2 (326-389)||(43445217-43445281)
chr2 (330-400)||(7565601-7565671)
chr2 (332-400)||(32652709-32652777)
chr2 (329-389)||(6178095-6178155)
chr2 (329-389)||(18514399-18514459)
[»] chr5 (10 HSPs)
chr5 (333-400)||(26412140-26412207)
chr5 (333-400)||(12080405-12080472)
chr5 (330-400)||(8762864-8762934)
chr5 (330-388)||(13888429-13888487)
chr5 (330-389)||(21321071-21321130)
chr5 (330-400)||(3014751-3014820)
chr5 (330-371)||(23954556-23954597)
chr5 (330-371)||(24886467-24886508)
chr5 (328-389)||(36055541-36055602)
chr5 (329-389)||(22616811-22616871)
[»] chr8 (8 HSPs)
chr8 (331-400)||(1872582-1872651)
chr8 (330-388)||(30650903-30650961)
chr8 (329-398)||(4108582-4108651)
chr8 (331-382)||(5018555-5018606)
chr8 (331-389)||(6446181-6446239)
chr8 (330-371)||(5299716-5299757)
chr8 (330-371)||(37970289-37970330)
chr8 (334-398)||(18756339-18756403)
[»] chr6 (4 HSPs)
chr6 (330-400)||(25441797-25441867)
chr6 (330-400)||(4487724-4487794)
chr6 (333-389)||(18306552-18306608)
chr6 (330-383)||(11083826-11083879)
[»] scaffold0008 (1 HSPs)
scaffold0008 (332-369)||(267658-267695)


Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 20 - 400
Target Start/End: Complemental strand, 8759927 - 8759546
Alignment:
Q  20 ctgagtgcatcaatgtttgccataggtaaatcaagggagcaaaattgaaagaatat-tggatagatagtgactaacagcttgtagtaagggctcttaaga 118  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8759927 ctgagtgcatcaatgtttgccataggtaaaccaagggagcaaaattgaaagaatatatggatagatagtgactaacagcttgtagtaagggctcttaaga 8759828  T
Q  119 ataaggtgacaaaattgtaaaatctatatatctaaatcctactaagttttctaccttaaaccctatttttatcctactttttccttcttaatcacatcgt 218  Q
    || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||| ||    
T  8759827 atcaggtgacaaaattgtaaaatctatatatctaaatcctactatgttttctaccttaaaccctatttttatcctactttttcattcttactcacatagt 8759728  T
Q  219 ggtgggtcctaattgtgatttattccattaacccttccattagttagttactagccaccattaaccctttcattttccttcaattagtaacaacccatta 318  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8759727 ggtgggtcctaattgtgatttattccattaaccctttcattagttagttactagccaccattaaccctttcattttccttcaattagtaacaacccatta 8759628  T
Q  319 tacttatggaggcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgtt 400  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8759627 tacttatgggggcttctatggtgtagccaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgtt 8759546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 140 - 325
Target Start/End: Complemental strand, 11798073 - 11797887
Alignment:
Q  140 atctatatatctaaatcctactaagttttctaccttaaaccctatttttatcctactttttc-cttcttaatcacatcgtggtgggtcctaattgtgatt 238  Q
    |||||||||||||||||||||||| | | ||||| |||||||||||| || ||||||||||| || ||||||||||| |||||||| |||||||||||||    
T  11798073 atctatatatctaaatcctactaaatctcctaccctaaaccctatttgtaccctactttttcactccttaatcacatagtggtgggccctaattgtgatt 11797974  T
Q  239 tattccattaacccttccattagttagttactagccaccattaaccctttcattttccttcaattagtaacaacccattatacttat 325  Q
    ||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11797973 tattctattaatcctttcattagttagttactagccaccattaaccctttcattttccttcaattagtaacaatccattatacttat 11797887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 330 - 400
Target Start/End: Complemental strand, 25470801 - 25470731
Alignment:
Q  330 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgtt 400  Q
    |||||||||||| |||||| |||||||||||||| ||||||||||||| |||| |||||| |||| |||||    
T  25470801 gcttctatggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgtt 25470731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 4902701 - 4902641
Alignment:
Q  329 ggcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaata 389  Q
    ||||||||||||| |||||  ||| |||||||||||||||||| ||||| ||||| |||||    
T  4902701 ggcttctatggtgaagtcagaaaattgacttttttgaaaaagttattttgtttagtcaata 4902641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 23402045 - 23402099
Alignment:
Q  335 tatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaata 389  Q
    ||||||| |||||| ||| |||||||||| ||||||| ||||| |||||||||||    
T  23402045 tatggtgcagtcaaaaaactgacttttttaaaaaagttattttgtttagccaata 23402099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 175 - 325
Target Start/End: Complemental strand, 8015342 - 8015191
Alignment:
Q  175 taaaccctatttttatcctactttttc-cttcttaatcacatcgtggtgggtcctaattgtgatttattccattaacccttccattagttagttactagc 273  Q
    ||||||||||||||| |||||||| || |||||||||||||| |||||||  ||||||||| ||||||||||||||| ||| ||||||||||||||||||    
T  8015342 taaaccctatttttaccctactttctcacttcttaatcacatagtggtggaccctaattgtaatttattccattaactctttcattagttagttactagc 8015243  T
Q  274 caccattaaccctttcattttccttcaattagtaacaacccattatacttat 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8015242 caccattaaccctttcattttccttcaattagtaacaacccattatacttat 8015191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 330 - 397
Target Start/End: Complemental strand, 14246572 - 14246505
Alignment:
Q  330 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataatt 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14246572 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataatt 14246505  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 330 - 400
Target Start/End: Complemental strand, 37795210 - 37795140
Alignment:
Q  330 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgtt 400  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||| || |||||||| |||| |||||    
T  37795210 gcttctatggtgtagttaagaaaatgactcttttgaaaaagtcattttgttcagccaatatcatagttgtt 37795140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 389
Target Start/End: Original strand, 5914938 - 5914997
Alignment:
Q  330 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaata 389  Q
    |||||||||||| |||||| |||||||||||||| ||||||||||||| |||| ||||||    
T  5914938 gcttctatggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaata 5914997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 338 - 388
Target Start/End: Original strand, 22721927 - 22721977
Alignment:
Q  338 ggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaat 388  Q
    |||||||| |||||||||||||||||| |||||||||||| ||||||||||    
T  22721927 ggtgtagttaagaaaatgacttttttggaaaagtcattttgtttagccaat 22721977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 399
Target Start/End: Complemental strand, 9743959 - 9743898
Alignment:
Q  338 ggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgt 399  Q
    |||| |||||| ||| |||||||||||||||||| ||||| |||| ||||||| ||||||||    
T  9743959 ggtgaagtcaaaaaattgacttttttgaaaaagttattttgtttaaccaataatataattgt 9743898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 330 - 395
Target Start/End: Original strand, 47073065 - 47073130
Alignment:
Q  330 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataa 395  Q
    ||||||||||||||||||  ||| ||||| |||||||||||| |||||||||  |||||| |||||    
T  47073065 gcttctatggtgtagtcagtaaattgactattttgaaaaagttattttattttaccaatagcataa 47073130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 389
Target Start/End: Original strand, 28292363 - 28292422
Alignment:
Q  330 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaata 389  Q
    |||||||  ||| |||||||||  |||||||||| ||||||| |||||||||||||||||    
T  28292363 gcttctacagtgcagtcaagaacctgacttttttaaaaaagttattttatttagccaata 28292422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 3043040 - 3042999
Alignment:
Q  330 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagt 371  Q
    ||||||| |||| |||||||||| ||||||||||||||||||    
T  3043040 gcttctacggtgcagtcaagaaattgacttttttgaaaaagt 3042999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 4205405 - 4205364
Alignment:
Q  330 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagt 371  Q
    ||||||| |||| |||||||||| ||||||||||||||||||    
T  4205405 gcttctacggtgcagtcaagaaactgacttttttgaaaaagt 4205364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 7703938 - 7703889
Alignment:
Q  322 ttatggaggcttctatggtgtagtcaagaaaatgacttttttgaaaaagt 371  Q
    ||||||| ||||||| |||| ||||| |||| ||||||||||||||||||    
T  7703938 ttatggaagcttctacggtgcagtcatgaaactgacttttttgaaaaagt 7703889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 36493479 - 36493520
Alignment:
Q  330 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagt 371  Q
    |||||||||||| ||||| |||| ||||||||||||||||||    
T  36493479 gcttctatggtgcagtcaggaaattgacttttttgaaaaagt 36493520  T

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Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 329 - 400
Target Start/End: Complemental strand, 54608026 - 54607955
Alignment:
Q  329 ggcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgtt 400  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54608026 ggcttctatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgtt 54607955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 332 - 400
Target Start/End: Complemental strand, 5125597 - 5125529
Alignment:
Q  332 ttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgtt 400  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  5125597 ttctatggtgtagtcaagaaaatgacttttttgaaaaagttattttatttaaccaataacataattgtt 5125529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 329 - 400
Target Start/End: Complemental strand, 11019858 - 11019787
Alignment:
Q  329 ggcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgtt 400  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||| ||||||    
T  11019858 ggcttctatggtgtagtcaaaaaaatgatttttttgaaaaagtcattttatttagccaatagcatgattgtt 11019787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 260 - 325
Target Start/End: Complemental strand, 5242595 - 5242530
Alignment:
Q  260 agttagttactagccaccattaaccctttcattttccttcaattagtaacaacccattatacttat 325  Q
    ||||||||||||||||||| ||||||||| ||||||| |||||||||||||| |||||||||||||    
T  5242595 agttagttactagccaccaataacccttttattttccctcaattagtaacaatccattatacttat 5242530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 42663989 - 42664049
Alignment:
Q  329 ggcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaata 389  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||    
T  42663989 ggcttctatggtgtagtcaagaaaatgactttttagaaaaagttattttatttagtcaata 42664049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 332 - 382
Target Start/End: Original strand, 29923035 - 29923085
Alignment:
Q  332 ttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttattta 382  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29923035 ttctatggtgtagtcaagaaaatgactttttttaaaaagtcattttattta 29923085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 332 - 382
Target Start/End: Original strand, 29972188 - 29972238
Alignment:
Q  332 ttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttattta 382  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29972188 ttctatggtgtagtcaagaaaatgactttttttaaaaagtcattttattta 29972238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 329 - 376
Target Start/End: Complemental strand, 36689829 - 36689781
Alignment:
Q  329 ggcttctatggtgtagtcaagaaaatgactt-ttttgaaaaagtcattt 376  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||    
T  36689829 ggcttctatggtgttgtcaagaaaatgactttttttgaaaaagtcattt 36689781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 330 - 400
Target Start/End: Original strand, 48154355 - 48154425
Alignment:
Q  330 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgtt 400  Q
    |||||||||||| ||| || |||||||||||||| ||||| ||||||| |||| |||||| |||| |||||    
T  48154355 gcttctatggtgcagttaaaaaaatgacttttttaaaaaaatcattttgtttaaccaatagcatagttgtt 48154425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 382
Target Start/End: Original strand, 23165291 - 23165342
Alignment:
Q  331 cttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttattta 382  Q
    |||||| |||| ||||| |||| |||||||||||||||||| ||||||||||    
T  23165291 cttctacggtgcagtcatgaaattgacttttttgaaaaagttattttattta 23165342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 20373027 - 20373068
Alignment:
Q  330 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagt 371  Q
    |||||||||||| ||||| |||| ||||||||||||||||||    
T  20373027 gcttctatggtgcagtcaggaaactgacttttttgaaaaagt 20373068  T

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Target: scaffold0312 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 326 - 394
Target Start/End: Original strand, 8205 - 8273
Alignment:
Q  326 ggaggcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacata 394  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8205 ggaggcttctatggtgttgtcaagaaaatgacttttttgaaaaagtcattttatttaaccaataacata 8273  T

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Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 326 - 394
Target Start/End: Complemental strand, 422367 - 422299
Alignment:
Q  326 ggaggcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacata 394  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  422367 ggaggcttctatggtgttgtcaagaaaatgacttttttgaaaaagtcattttatttaaccaataacata 422299  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 330 - 400
Target Start/End: Complemental strand, 28013083 - 28013013
Alignment:
Q  330 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgtt 400  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||  |||||||||| ||||||||||    
T  28013083 gcttctatggtgtagtcaagaaaatgtcttttttgaaaaagttattttggttagccaatagcataattgtt 28013013  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 330 - 400
Target Start/End: Complemental strand, 7843165 - 7843095
Alignment:
Q  330 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgtt 400  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||  || ||||||| ||||||||||    
T  7843165 gcttctatggtgtagtcaagaaaatgactttttttaaaaagttattttggttggccaatagcataattgtt 7843095  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 382
Target Start/End: Original strand, 42663232 - 42663283
Alignment:
Q  331 cttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttattta 382  Q
    ||||||||||| ||||| |||| |||||||||||||||||| ||||||||||    
T  42663232 cttctatggtgcagtcacgaaattgacttttttgaaaaagttattttattta 42663283  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 330 - 396
Target Start/End: Complemental strand, 26970901 - 26970835
Alignment:
Q  330 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataat 396  Q
    |||| |||||||||||||  ||| |||||||||||||||||| |||||||||  |||||| ||||||    
T  26970901 gcttttatggtgtagtcagtaaactgacttttttgaaaaagttattttattttaccaatagcataat 26970835  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 389
Target Start/End: Complemental strand, 10598264 - 10598206
Alignment:
Q  331 cttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaata 389  Q
    |||||| |||| |||||||||| ||||||||||||||||||  |||| |||| ||||||    
T  10598264 cttctacggtgcagtcaagaaactgacttttttgaaaaagttgttttgtttaaccaata 10598206  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 5500738 - 5500674
Alignment:
Q  325 tggaggcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaata 389  Q
    |||||||||||| |||| ||| || ||| | |||||||||||||||| ||||| |||||| ||||    
T  5500738 tggaggcttctacggtgcagttaaaaaactaacttttttgaaaaagttattttgtttagctaata 5500674  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 47555136 - 47555076
Alignment:
Q  329 ggcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaata 389  Q
    |||||||| |||| ||| | |||| |||||||||||||||||| ||||| |||| ||||||    
T  47555136 ggcttctacggtgcagttaggaaactgacttttttgaaaaagttattttgtttaaccaata 47555076  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 330 - 397
Target Start/End: Complemental strand, 6357201 - 6357134
Alignment:
Q  330 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataatt 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  6357201 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcatttaatttagccaatagcataatt 6357134  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 335 - 397
Target Start/End: Complemental strand, 59548 - 59486
Alignment:
Q  335 tatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataatt 397  Q
    ||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||  |||||||    
T  59548 tatggtgtagttaagcaaatgacttttttgaaaaagttattttatttagccaattgcataatt 59486  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 326 - 389
Target Start/End: Original strand, 43445217 - 43445281
Alignment:
Q  326 ggaggcttctatggtgtagtcaagaaaatgactttttt-gaaaaagtcattttatttagccaata 389  Q
    |||| |||||||||||||||||||||||| | ||||||  |||||||||||||||||||||||||    
T  43445217 ggagccttctatggtgtagtcaagaaaataatttttttaaaaaaagtcattttatttagccaata 43445281  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 330 - 400
Target Start/End: Complemental strand, 7565671 - 7565601
Alignment:
Q  330 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgtt 400  Q
    ||||||| |||| |||||| |||||||||||||| ||||||||||||| |||| |||||| |||| |||||    
T  7565671 gcttctacggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgtt 7565601  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 332 - 400
Target Start/End: Complemental strand, 32652777 - 32652709
Alignment:
Q  332 ttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgtt 400  Q
    |||||||||| |||||| ||||| |||||||| ||||||||||||| |||| |||||| |||| |||||    
T  32652777 ttctatggtgcagtcaaaaaaataacttttttaaaaaagtcattttgtttaaccaatagcatagttgtt 32652709  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 6178155 - 6178095
Alignment:
Q  329 ggcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaata 389  Q
    |||||||| |||| |||||| ||| ||||||||||  |||||| ||||| |||||||||||    
T  6178155 ggcttctacggtgcagtcaaaaaactgacttttttagaaaagttattttgtttagccaata 6178095  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 18514399 - 18514459
Alignment:
Q  329 ggcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaata 389  Q
    |||||||| |||| ||||| |||| ||| |||||||||||||| ||||| |||||| ||||    
T  18514399 ggcttctacggtggagtcaggaaactgaattttttgaaaaagttattttgtttagctaata 18514459  T

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Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 333 - 400
Target Start/End: Complemental strand, 26412207 - 26412140
Alignment:
Q  333 tctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgtt 400  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||    
T  26412207 tctatggtgtagtcaagaaaatgacttatttgaaaaagtcattttatttagccaatagcatgattgtt 26412140  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 333 - 400
Target Start/End: Original strand, 12080405 - 12080472
Alignment:
Q  333 tctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgtt 400  Q
    ||||||||||||||| |||| |||||||||||||||||| ||||| ||||| | ||||||||||||||    
T  12080405 tctatggtgtagtcaggaaattgacttttttgaaaaagttattttgtttagtcgataacataattgtt 12080472  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 330 - 400
Target Start/End: Original strand, 8762864 - 8762934
Alignment:
Q  330 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgtt 400  Q
    |||||||||||| |||||| |||||||||||||| ||||||||||||| |||| |||||| |||| |||||    
T  8762864 gcttctatggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgtt 8762934  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 330 - 388
Target Start/End: Complemental strand, 13888487 - 13888429
Alignment:
Q  330 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaat 388  Q
    |||||||||||||||| || |||||||||||||| |||||||||||||||||| |||||    
T  13888487 gcttctatggtgtagtaaaaaaaatgacttttttaaaaaagtcattttatttaaccaat 13888429  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 389
Target Start/End: Complemental strand, 21321130 - 21321071
Alignment:
Q  330 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaata 389  Q
    |||||||||||| || ||  ||| |||||||||||||||||| ||||| |||||||||||    
T  21321130 gcttctatggtgcagccagaaaactgacttttttgaaaaagttattttgtttagccaata 21321071  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 400
Target Start/End: Complemental strand, 3014820 - 3014751
Alignment:
Q  330 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgtt 400  Q
    |||| ||||||| |||||| ||||||| |||||| ||||||||||||| |||| |||||| |||| |||||    
T  3014820 gcttttatggtgcagtcaacaaaatgattttttt-aaaaagtcattttgtttaaccaatagcatagttgtt 3014751  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 23954556 - 23954597
Alignment:
Q  330 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagt 371  Q
    |||||||||||| ||||| |||| ||||||||||||||||||    
T  23954556 gcttctatggtgcagtcaggaaactgacttttttgaaaaagt 23954597  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 24886508 - 24886467
Alignment:
Q  330 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagt 371  Q
    |||| ||||||| |||||||||| ||||||||||||||||||    
T  24886508 gcttttatggtgcagtcaagaaactgacttttttgaaaaagt 24886467  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 389
Target Start/End: Original strand, 36055541 - 36055602
Alignment:
Q  328 aggcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaata 389  Q
    ||||||||| ||||||||||| ||| | ||||||||| |||||| ||||| |||||| ||||    
T  36055541 aggcttctaaggtgtagtcaaaaaactaacttttttggaaaagttattttgtttagctaata 36055602  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 22616871 - 22616811
Alignment:
Q  329 ggcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaata 389  Q
    ||||||||||||| |||||  ||| ||| ||||||| |||||| ||||| |||||||||||    
T  22616871 ggcttctatggtgcagtcagaaaactgatttttttggaaaagttattttgtttagccaata 22616811  T

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Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 331 - 400
Target Start/End: Original strand, 1872582 - 1872651
Alignment:
Q  331 cttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgtt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| |||||    
T  1872582 cttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttgttcagccattaacatagttgtt 1872651  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 330 - 388
Target Start/End: Original strand, 30650903 - 30650961
Alignment:
Q  330 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaat 388  Q
    ||||||| |||| |||||||||| |||||||||||||||||| ||||| ||||| ||||    
T  30650903 gcttctacggtgcagtcaagaaattgacttttttgaaaaagttattttgtttagtcaat 30650961  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 398
Target Start/End: Original strand, 4108582 - 4108651
Alignment:
Q  329 ggcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattg 398  Q
    ||||| || |||| |||||| ||| |||||||||||||||||| ||||| ||||| |||||| |||||||    
T  4108582 ggcttttacggtgaagtcaaaaaattgacttttttgaaaaagttattttgtttagtcaataatataattg 4108651  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 382
Target Start/End: Complemental strand, 5018606 - 5018555
Alignment:
Q  331 cttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttattta 382  Q
    ||||||||||| | ||| |||| |||||||||||||||||| ||||||||||    
T  5018606 cttctatggtgcaatcacgaaattgacttttttgaaaaagttattttattta 5018555  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 389
Target Start/End: Original strand, 6446181 - 6446239
Alignment:
Q  331 cttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaata 389  Q
    |||||| |||| |||||||||| |||||||||| |||||||  |||| |||||||||||    
T  6446181 cttctacggtgcagtcaagaaactgacttttttaaaaaagttgttttttttagccaata 6446239  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 5299716 - 5299757
Alignment:
Q  330 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagt 371  Q
    |||||||||||| ||||| |||| ||||||||||||||||||    
T  5299716 gcttctatggtgcagtcatgaaactgacttttttgaaaaagt 5299757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 37970289 - 37970330
Alignment:
Q  330 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagt 371  Q
    |||||||||||| ||||| |||| ||||||||||||||||||    
T  37970289 gcttctatggtgcagtcaggaaagtgacttttttgaaaaagt 37970330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 398
Target Start/End: Original strand, 18756339 - 18756403
Alignment:
Q  334 ctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattg 398  Q
    |||||||| |||||  ||| ||| ||||| |||||||| ||||| |||||||||||| |||||||    
T  18756339 ctatggtgcagtcagaaaattgattttttggaaaaagttattttgtttagccaataatataattg 18756403  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 330 - 400
Target Start/End: Complemental strand, 25441867 - 25441797
Alignment:
Q  330 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgtt 400  Q
    |||||||||||| |||||| |||||||||||||| ||||||||||||| |||| |||||| |||| |||||    
T  25441867 gcttctatggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgtt 25441797  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 330 - 400
Target Start/End: Original strand, 4487724 - 4487794
Alignment:
Q  330 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgtt 400  Q
    |||||||||||| ||| || |||||||||||||| ||||||||||||| |||| |||||| |||| |||||    
T  4487724 gcttctatggtgcagttaaaaaaatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgtt 4487794  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 333 - 389
Target Start/End: Original strand, 18306552 - 18306608
Alignment:
Q  333 tctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaata 389  Q
    ||||||||||||| ||| |||||||||||||| ||| |||||||| |||||||||||    
T  18306552 tctatggtgtagttaaggaaatgacttttttggaaatgtcattttgtttagccaata 18306608  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 383
Target Start/End: Original strand, 11083826 - 11083879
Alignment:
Q  330 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttag 383  Q
    ||||||| |||| |||||| ||| | |||||||||||||||| |||||||||||    
T  11083826 gcttctacggtgaagtcaaaaaatttacttttttgaaaaagttattttatttag 11083879  T

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Target: scaffold0008 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 369
Target Start/End: Complemental strand, 267695 - 267658
Alignment:
Q  332 ttctatggtgtagtcaagaaaatgacttttttgaaaaa 369  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  267695 ttctatggtgcagtcaagaaactgacttttttgaaaaa 267658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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