View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15718_high_19 (Length: 396)
Name: NF15718_high_19
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15718_high_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 9004042 - 9004305
Alignment:
| Q |
11 |
catcatcatcataacaacatggttaataatccattagaggcatcatcatcatcaatggtgatagcatgtggtgatggtggtcttactaattgggtagctt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9004042 |
catcatcatcataacaacatggttaataatccattagaggcatcatcatcatcaatggtgatagcatgtggtgatggtggtcttactaattgggtagctt |
9004141 |
T |
|
| Q |
111 |
tggataggcttgttgcttctcaattgaatggacaaactgaggcatctaggcaattggcttgctttaatgaccccacaatgggatattgcactaatgatca |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9004142 |
tggataggcttgttgcttctcaattgaatggacaaactgaggcttctaggcaattggcttgctttactgaccccacaatgggatattgcactaatgatca |
9004241 |
T |
|
| Q |
211 |
agatcttcaacttcccacccttaaatcatcatcatcaacttcatcactatcaacacacgccaga |
274 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9004242 |
agatcttcaacttcccacacttaaatcatcatcatcaacttcatcactatcaacacacgccaga |
9004305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 308 - 378
Target Start/End: Original strand, 9004339 - 9004409
Alignment:
| Q |
308 |
gcttacattagtccttcacatgactatgcaagtgagattgatctgtggaactttgctcgatcaacttcatc |
378 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9004339 |
gcttacattagtccctcacatgactatgcaagtgagattgatctgtggaactttgctcgatcaacttcatc |
9004409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University