View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15718_high_23 (Length: 352)
Name: NF15718_high_23
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15718_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 21086968 - 21087141
Alignment:
| Q |
17 |
aagaattttaaatacaatgaccaaagaccaagtcataggcaacgtacacgttatttggtaaggatcaaacagtgaaaaacttatctataagtatttctaa |
116 |
Q |
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| T |
21086968 |
aagaattttaaatacaatgaccaa-gaccaagtcataggcaacgtacacgttatttggtaaggatcaaatagtgaaaaacttatctataagtatttctaa |
21087066 |
T |
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| Q |
117 |
tattatcttcaaaacatgcacacaatctttatcacaacaaaacaaacccattccaaacacaactaatcatgctat |
191 |
Q |
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| T |
21087067 |
tattatcttcaaaacatgcacacaatctttatcacaacaaaacaaacccattccaaacacaactaatcatgctat |
21087141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 223 - 336
Target Start/End: Original strand, 21087173 - 21087286
Alignment:
| Q |
223 |
agcattcaagaaaattcaattttccaaattagcattgtttttcaaaccagttcaaaaacctaaaagaaataatgtatcaacaagcatggagaatttacca |
322 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21087173 |
agcattcaagaaaattcagttttccaaattagcattgtttttcaaaccagttcaaaaacctaaaagaaataatgtatcaacaagcatggagaatttacca |
21087272 |
T |
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| Q |
323 |
catgaattggtatc |
336 |
Q |
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|||||||||||||| |
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| T |
21087273 |
catgaattggtatc |
21087286 |
T |
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