View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15718_high_25 (Length: 340)
Name: NF15718_high_25
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15718_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 135 - 332
Target Start/End: Complemental strand, 39939814 - 39939617
Alignment:
| Q |
135 |
ggttggaatctgaaattgaaacatgttgtaatgaaatagcaaaacaattgaactcaccaatgtacaatagaacaaataccacggccaatctcaatagatt |
234 |
Q |
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| T |
39939814 |
ggttggaatctgaaattgaaacatgttgtaatgaaataccaaaacaattgaactcaccaatgtacaatagaacaaataccacggccaatctcaatagatt |
39939715 |
T |
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| Q |
235 |
agcaacacaaaaattttcgatataacaagagagatcccatgttggtccacatactgaactgaaaacatatataccaagtaagaagtcagttctctgct |
332 |
Q |
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| T |
39939714 |
agcaacacaaaaaatttcgatataacaagagagatcccatgttggtccacatactgaacttaaaacatatattccaagtaagaagtcagttctctgct |
39939617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 39939948 - 39939875
Alignment:
| Q |
1 |
gcccatatcaatttgcaagcagagtgacatagacatctaattatgcccaatttatacagtacatagaagaacag |
74 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39939948 |
gcccatatcaatttgcaagcagagtgacatagacatctaattatgcccaatttatacagtacatagaagaacag |
39939875 |
T |
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