View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15718_high_27 (Length: 331)
Name: NF15718_high_27
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15718_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 32989783 - 32989470
Alignment:
| Q |
1 |
aaaagaggagctttcaaagctttgtgtggaccccactttcaataggctccaccccctactttttcttatattaaaaatattttaatgtgtaacaacttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32989783 |
aaaagaggagctttcaaagctttgtgtggaccccactttcaataggctccaccccctactttttcttatattaaaaatattttaatgtgtaacaacttta |
32989684 |
T |
|
| Q |
101 |
tccgctactatagcagcttcaacctaacattttcacannnnnnncatcacctgtttctctcatgatattcattcaccaccatctcttaaaagggtatcta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32989683 |
tccgctactatagcagcttcaacctaacattttcacatttttt-catcacctgtttctctcatgatattcattcaccaccatctcttaaaagggtatcta |
32989585 |
T |
|
| Q |
201 |
ttcaaatactttgaaaattggcagaagaaaatgattaaattaatgaattcatattcatcctctaggttttttctagtccgtatagtactaattaatgcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32989584 |
ttcaaatactttgaaaattggcagaagaaaatgattaaattaatgaattcatattcatcctctaggttttttctagtccgtatagtactaattaatgcat |
32989485 |
T |
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| Q |
301 |
gtgtgttattgaggt |
315 |
Q |
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||||||||||||||| |
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| T |
32989484 |
gtgtgttattgaggt |
32989470 |
T |
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