View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15718_high_35 (Length: 281)
Name: NF15718_high_35
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15718_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 8083051 - 8083317
Alignment:
| Q |
1 |
gtttgatttgagatatcagcggtaactgaaccatatccggcaaattgatatacgagctagacattgaagatttgaatagaggaataagtttggaattaaa |
100 |
Q |
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| T |
8083051 |
gtttgatttgagatatcagtggtaactgaaccatatccggcaaattgatatacgagctagacattgaagatttgaatagaggaataagtttggaattaaa |
8083150 |
T |
|
| Q |
101 |
ccagtgagatgtgaaagtttctaaaaacttcattgagtaaaatgctaagaaaagtaccggcgtttgtaattcttgatttcatatatatgtcaatgtgttt |
200 |
Q |
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| T |
8083151 |
ccagtgagatgtgaaagtttctaaaaacttcatttagtaaaatgctaagaaaagtaccggcgtttgtaattcttgatttcatatatatgtcgatgtgttt |
8083250 |
T |
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| Q |
201 |
gtatatgtttcatttgtattgaaaatacaatttcattaagagaaa-tttacaaatttgcttatttat |
266 |
Q |
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| T |
8083251 |
gtatatgtttcatttgaattgaaaatacaatttcattaagagaaattttacaaatttgcttatttat |
8083317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 3 - 155
Target Start/End: Complemental strand, 37808035 - 37807884
Alignment:
| Q |
3 |
ttgatttgagatatcagcggtaactgaaccatatccggcaaattgatatacgagctagacattgaagatttgaatagaggaataagtttggaattaaacc |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37808035 |
ttgatttgagatatcagcggtaactgaaccatatccggcaaattgatatacgagctagacattgaagttttgaatagaggaataagtttggaattaaact |
37807936 |
T |
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| Q |
103 |
agtgagatgtgaaagtttctaaaaacttcattgagtaaaatgctaagaaaagt |
155 |
Q |
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| T |
37807935 |
agtgagatgttaatgtttct-aaaactccattgagtaaaatgctaaggaaagt |
37807884 |
T |
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