View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15718_high_36 (Length: 279)
Name: NF15718_high_36
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15718_high_36 |
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| [»] scaffold0628 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 6e-80; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 62 - 278
Target Start/End: Complemental strand, 47551835 - 47551605
Alignment:
| Q |
62 |
cttttttcaatcgacacaacacaaattctacctaatgtgaaaatttatgtttcgtttttaactcaatttccacgaa-----cgataagattaaataaagc |
156 |
Q |
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| T |
47551835 |
cttttttcaattgacacaacacaaattctacataatgtgaaaatttatgtttcatttttaactcaatttccacgcatgttccgataagattaaataaacc |
47551736 |
T |
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| Q |
157 |
aagcaagcaatatccaattgaaccctggtatatatcgcgagactccttta---------cccgacagcttacgtgtttaatttctaaaagaaagagagaa |
247 |
Q |
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| T |
47551735 |
aagcaaacaatatccaattgaaccctggtatatatcgcgagactcctttattgaaattccccgacagcttacgtgtttaatttctaaaagaaagagagaa |
47551636 |
T |
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| Q |
248 |
gcatagagttctggatttcatggaaaacatg |
278 |
Q |
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| T |
47551635 |
gcatagagttccggatttcatggaaaacatg |
47551605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 47551922 - 47551871
Alignment:
| Q |
9 |
aattatactccccc-taataggtacacccgtactatacaaacattaccaatg |
59 |
Q |
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| T |
47551922 |
aattatactcccccctaataggtacacccatactatacaaacactaccaatg |
47551871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 13346332 - 13346260
Alignment:
| Q |
63 |
ttttttcaatcgacacaacacaaattctacctaatgtgaaaatttatgtttcgt-ttttaactcaatttccac |
134 |
Q |
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| T |
13346332 |
ttttttcaattcacacaacactagttctaccaaacgtgaaaatttatgttttgtcttttaattcaatttccac |
13346260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 13343397 - 13343324
Alignment:
| Q |
62 |
cttttttcaatcgacacaacacaaattctacctaatgtgaaaatttatgtttcgt-ttttaactcaatttccac |
134 |
Q |
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| T |
13343397 |
cttttttcaattcacacaacactagttctacccaacgtgaaaatttgtgttttgtcttttaattcaatttccac |
13343324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 11795129 - 11795187
Alignment:
| Q |
209 |
cgacagcttacgtgtttaatttctaaaagaaagagagaagcatagagttctggatttca |
267 |
Q |
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| T |
11795129 |
cgaccgcttacgtgtttaatttctaaaagaaagagggaagcatacagtttcggatttca |
11795187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 55074440 - 55074508
Alignment:
| Q |
62 |
cttttttcaatcgacacaacacaaattctacctaatgtgaaaatttatgtttcgtttttaactcaattt |
130 |
Q |
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| T |
55074440 |
cttttttcaattcacacaacactaattctaccaaatataaaaatttgtgtttagtctttaactcaattt |
55074508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0628 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0628
Description:
Target: scaffold0628; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 5792 - 5864
Alignment:
| Q |
63 |
ttttttcaatcgacacaacacaaattctacctaatgtgaaaatttatgtttcgt-ttttaactcaatttccac |
134 |
Q |
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| T |
5792 |
ttttttcaattcacacaacactagttctaccaaatatgagaatttgtgtttagtattttaactcaatttccac |
5864 |
T |
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