View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15718_high_37 (Length: 278)
Name: NF15718_high_37
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15718_high_37 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 55288634 - 55288884
Alignment:
| Q |
18 |
ctaatttgataaattgaaaatgattcctagaaattggtcttcacggttcgcggg-tggtgtaatggtgttgtgccatctagcgcctctttgccctgccca |
116 |
Q |
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| T |
55288634 |
ctaatttgataaatttaaaatgattcctagaaattggtcttcacggttcgcggggtggtgtaatggtgttgtgccatctagcgcctctttgccctgccca |
55288733 |
T |
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| Q |
117 |
ctgcaggctgattgtacgaaattgggaatctaagtttcaaaattccaacaaaatgaattttggaatcaaattccagtttacgtttcagaaattaagtttt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55288734 |
ctgcaggctgattgtacgaaattgggaatctaagtttcaaaataccaacaaaatgaattttggaatcaaattccagtttacgtttcagaaattaagtttt |
55288833 |
T |
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| Q |
217 |
aatgtaatgaatgcacaatttttaacataaaattttatcattagacttctt |
267 |
Q |
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| T |
55288834 |
aatgtaatgaatgcacaatttttaacataaaattttatcattagacttctt |
55288884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 264
Target Start/End: Original strand, 45040393 - 45040447
Alignment:
| Q |
210 |
aagttttaatgtaatgaatgcacaatttttaacataaaattttatcattagactt |
264 |
Q |
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| T |
45040393 |
aagtttcaatgtaatgaatgcacaatttttaagagaaagttttttcattaaactt |
45040447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 22295304 - 22295263
Alignment:
| Q |
210 |
aagttttaatgtaatgaatgcacaatttttaacataaaattt |
251 |
Q |
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| T |
22295304 |
aagtttcaatgtaatgaatgcacaattcttaagataaaattt |
22295263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 37706587 - 37706546
Alignment:
| Q |
210 |
aagttttaatgtaatgaatgcacaatttttaacataaaattt |
251 |
Q |
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|||||| ||||||||||||||||||||||||| |||| |||| |
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| T |
37706587 |
aagtttcaatgtaatgaatgcacaatttttaagataagattt |
37706546 |
T |
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