View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15718_high_43 (Length: 259)
Name: NF15718_high_43
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15718_high_43 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 12 - 245
Target Start/End: Complemental strand, 34574039 - 34573805
Alignment:
| Q |
12 |
gcgaatgtaactataaagatgaaatccattaaaaagtagttttattattcttttttgaatctgaagccttaggtcaataagtctattgttatggtgattt |
111 |
Q |
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| T |
34574039 |
gcgaatgtaactataaagatgaaatccattaaaaagtagttttattattcttttttgaatctgaagccttaggtccataagtctattgttatggtgattt |
34573940 |
T |
|
| Q |
112 |
gatttttatattaataatgcagacttgctttcttagctat-aatcttcttgcgaagctgatcgttaatttgtgcttgagcaaagtgaatatcaacaagaa |
210 |
Q |
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| T |
34573939 |
gatttttatattaataatgcagatttgctttcttagctatcaatcttcttgcgaatctgatcgttaatttgtgcttgagcaaagtgaatatcaacaagaa |
34573840 |
T |
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| Q |
211 |
tttagcttggtaaggaccatcagaactatgtttgt |
245 |
Q |
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| T |
34573839 |
tttagcttggtaaggaccatcagaattatgtttgt |
34573805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 215
Target Start/End: Complemental strand, 38492016 - 38491916
Alignment:
| Q |
120 |
tattaataatgcagacttgctttcttagctat-aatcttcttgcgaagctgatcgttaatttgt----gcttgagcaaagtgaatatcaacaagaattta |
214 |
Q |
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|||||||||||||| ||| |||||| | ||| |||||| ||| |||||||||| ||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
38492016 |
tattaataatgcaggattggtttcttggttatcaatctttttgtgaagctgatcattaatttgtttgtgcttgagcaaagttaatatcaacaagaattta |
38491917 |
T |
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| Q |
215 |
g |
215 |
Q |
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| T |
38491916 |
g |
38491916 |
T |
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