View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15718_high_45 (Length: 248)
Name: NF15718_high_45
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15718_high_45 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 33388012 - 33388243
Alignment:
| Q |
1 |
gtatacgttcaatagtgtgagatgatctccatcaatgtgtgcaaacctagcttttgcttcatctgcagcttcttgtgcatccctaggccgaataaagcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33388012 |
gtatacgttcaatagtgtgagatgatctccatcaatgtgtgcaaacctagcttttgcttcatctgcagcttcttgtgcatccctaggccgaataaagcaa |
33388111 |
T |
|
| Q |
101 |
ttgggtaccgataccatcgcagatattgaaagaatctcgtttgaacagttgaactctggactaacaataagcatctttgacatctgagggtccaatggaa |
200 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33388112 |
ttgggtaccgctaccatcgcagaaattgaaagaatctcgtttgaacagttgaactctggactaacaataagcatctttgacatctgagggtccaatggaa |
33388211 |
T |
|
| Q |
201 |
actcactcataatctcacccagctttgttaag |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
33388212 |
actcactcataatctcacccagctttgttaag |
33388243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 2 - 232
Target Start/End: Complemental strand, 20817091 - 20816861
Alignment:
| Q |
2 |
tatacgttcaatagtgtgagatgatctccatcaatgtgtgcaaacctagcttttgcttcatctgcagcttcttgtgcatccctaggccgaataaagcaat |
101 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||| |||| |||||||||||| |||||||| |||||| |||||| ||| ||||||| |||||||||| |
|
|
| T |
20817091 |
tatacattcaagagtgtgagatgatctccatcaacgtgtataaacctagctttcgcttcatccgcagctatttgtgcctccttaggccggataaagcaat |
20816992 |
T |
|
| Q |
102 |
tgggtaccgataccatcgcagatattgaaagaatctcgtttgaacagttgaactctggactaacaataagcatctttgacatctgagggtccaatggaaa |
201 |
Q |
| |
|
||||||| || | ||||||||| ||||| |||||||| ||||||||||||||||| || ||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
20816991 |
tgggtactgacagcatcgcagaaattgacagaatctcatttgaacagttgaactcagggctaacaacaagcatctttgacatctgagggtccaacggaaa |
20816892 |
T |
|
| Q |
202 |
ctcactcataatctcacccagctttgttaag |
232 |
Q |
| |
|
|||||||||||||| ||||| |||||||||| |
|
|
| T |
20816891 |
ctcactcataatcttacccaactttgttaag |
20816861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 115 - 232
Target Start/End: Original strand, 38779167 - 38779284
Alignment:
| Q |
115 |
catcgcagatattgaaagaatctcgtttgaacagttgaactctggactaacaataagcatctttgacatctgagggtccaatggaaactcactcataatc |
214 |
Q |
| |
|
||||||||| |||||||||||||| || |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38779167 |
catcgcagaaattgaaagaatctcattcgaacagttgaactcaggactaacaacaagcatctttgacatctgagggtccaatggaaactcactcataatc |
38779266 |
T |
|
| Q |
215 |
tcacccagctttgttaag |
232 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
38779267 |
tcaccaagctttgttaag |
38779284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 38778641 - 38778748
Alignment:
| Q |
1 |
gtatacgttcaatagtgtgagatgatctccatcaatgtgtgcaaacctagcttttgcttcatctgcagcttcttgtgcatccctaggccgaataaagcaa |
100 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||| |||||| ||||||||||| ||||||||| |
|
|
| T |
38778641 |
gtatacattcaagagtgtgagatgatctccatcaatgtgtccaaacctagctttggcttcatccgcagctttttgtgcctccctaggccggataaagcaa |
38778740 |
T |
|
| Q |
101 |
ttgggtac |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
38778741 |
ttgggtac |
38778748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University