View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15718_high_51 (Length: 216)
Name: NF15718_high_51
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15718_high_51 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 7605310 - 7605112
Alignment:
| Q |
1 |
ccaaataataaaatataatatagaatgaaaggttctttaggtaaatggtaaataacttnnnnnnngtgaatgatatgataagtttccattgaagtgtgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
7605310 |
ccaaataataaaatataatatagaatgaaaggttctttaggtaaatggtaaataacttaaaaaaagtgaatgatatgataagtttccattggagtgtgtt |
7605211 |
T |
|
| Q |
101 |
aaaggatgtggcagaggatgtgaccttaacattcctctctttgataagatgcaagtggtggtttcttttgttgtgaacgaagttgtattagtactatgt |
199 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7605210 |
aaagggtgtggcagagggtgtgaccttaacattcctctctttgataagatgcaagtggtggtttcttttgttgtgaacgaagttgtattagtactatgt |
7605112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 66 - 197
Target Start/End: Original strand, 8942803 - 8942935
Alignment:
| Q |
66 |
gtgaatgatatgataagtttccattgaagtgtgttaaaggatgtggcagaggatgtgaccttaacattcctctctttgataagatgcaagtggtggtttc |
165 |
Q |
| |
|
|||||||| ||| ||||||||||||||| |||| ||||| |||| |||||| |||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
8942803 |
gtgaatgacatggtaagtttccattgaaatgtgccaaagggtgtgtcagagggtgtggccttagcattcctctctttgataagatgcaagtggtggtttc |
8942902 |
T |
|
| Q |
166 |
-ttttgttgtgaacgaagttgtattagtactat |
197 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |
|
|
| T |
8942903 |
tttttgttgtgcacgaagttgtattagtactat |
8942935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 8942724 - 8942766
Alignment:
| Q |
1 |
ccaaataataaaatataatatagaatgaaaggttctttaggtaa |
44 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8942724 |
ccaaataataaaatataatata-aatgaaaggttctttaggtaa |
8942766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 38715179 - 38715303
Alignment:
| Q |
1 |
ccaaataataaaatataatatagaatgaaaggttctttaggtaaatggtaaataacttnnnnnnngtgaatgatatgataagtttccattgaagtgtgtt |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| | |||||||||||| |||||||||||| ||||||| |||| |||||||| |
|
|
| T |
38715179 |
ccaaataataaaatataatataaaatgaaaggttctttaggttagaggtaaataacttaaaaaaagtgaatgatatggtaagttttcattagagtgtgtt |
38715278 |
T |
|
| Q |
101 |
aaaggatgtggcagaggatgtgacc |
125 |
Q |
| |
|
||||| |||| | |||| ||||||| |
|
|
| T |
38715279 |
aaagggtgtgtcggagggtgtgacc |
38715303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University