View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15718_high_6 (Length: 535)
Name: NF15718_high_6
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15718_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 19 - 520
Target Start/End: Complemental strand, 1230274 - 1229773
Alignment:
| Q |
19 |
ccattgtcatattaaatttgtttgcaaattctaactactatttaatttcattttagtaactcaatcctcacatttaaaaatatataccaatatattgttt |
118 |
Q |
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| T |
1230274 |
ccattgtcatattaaatttgtttgcaaattctaactactatttaatttcattttagtaactcaatcctcacatttaaaaatatataccaatatattgttt |
1230175 |
T |
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| Q |
119 |
gattcattttattgacattgaagagatacaaacaatagaaaaacttccattttgcaatgaaaatagtggtaccttgctacacctctgtattttgagactc |
218 |
Q |
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| T |
1230174 |
gattcattttattgacattgaagagatacaaacaatagaaaaacttccattttgcaatgaaaatagtggtaccttgctacacctctgtattttgagactc |
1230075 |
T |
|
| Q |
219 |
ctctagaaaatccactgctttttctacaaatcgaaaactattaatcaaaatcaaaatcatatatacacaccatcataaaagttactcagtatctctgatc |
318 |
Q |
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| T |
1230074 |
ctctagaaaatccactgctttttctacaaatcgaaaactattaatcaaaatcaaaatcatatatacacaccatcataaaagttactcagtatctctgatc |
1229975 |
T |
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| Q |
319 |
aacctctccatcgaagttgttgtattaatttaatggccaaaaatattatattatggtcaaccattagacttaattcaacaaatttgatgtgattagaaag |
418 |
Q |
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| T |
1229974 |
aatctctccatcgaagttgttgtattaatctaatggccaaaaatattatattatggtcaaccattagacttaatccaacgactttgatgtgattagaaag |
1229875 |
T |
|
| Q |
419 |
atgtctgagtttgcggagaatcatatattataagaattttaatgaccaaaccttcttaaggatccaatatattcttcttttgattggccttccatccctt |
518 |
Q |
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| T |
1229874 |
atgttcgattttacggagaatcatatattataaggattttagtgaccaaaccttcttaaggatccgatatattcttcttttgattggccttccatccctt |
1229775 |
T |
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| Q |
519 |
tg |
520 |
Q |
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|| |
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| T |
1229774 |
tg |
1229773 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 24989937 - 24989983
Alignment:
| Q |
188 |
taccttgctacacctctgtattttgagactcctctagaaaatccact |
234 |
Q |
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| T |
24989937 |
taccttgctactcctctatattttgatacacctctagaaaatccact |
24989983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 2051772 - 2051718
Alignment:
| Q |
189 |
accttgctacacctctgtattttgagactcctctagaaaatccactgctttttct |
243 |
Q |
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| T |
2051772 |
accttgcaacacctctatactttgagacacctcttgaaaagccactgctttttct |
2051718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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