View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15718_high_8 (Length: 487)

Name: NF15718_high_8
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15718_high_8
NF15718_high_8
[»] chr4 (4 HSPs)
chr4 (311-469)||(3698747-3698905)
chr4 (63-255)||(3698549-3698732)
chr4 (19-53)||(3698520-3698554)
chr4 (215-295)||(50001078-50001158)
[»] chr2 (2 HSPs)
chr2 (208-295)||(18745099-18745186)
chr2 (221-295)||(28224875-28224949)
[»] chr6 (1 HSPs)
chr6 (208-297)||(28625804-28625893)
[»] chr7 (2 HSPs)
chr7 (235-295)||(25187103-25187163)
chr7 (221-277)||(45003055-45003111)
[»] chr5 (1 HSPs)
chr5 (221-297)||(12033304-12033380)


Alignment Details
Target: chr4 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 311 - 469
Target Start/End: Original strand, 3698747 - 3698905
Alignment:
Q  311 ttgaaatataaaagttggtgttacttgtaattcctcaccctcctaatgttgtgatgtgtttgttagatataagctgtttggttgcagtgccttttggaaa 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3698747 ttgaaatataaaagttggtgttacttgtaattcctcaccctcctaatgttgtgatgtgtttgttagatataagctgtttggttgcagtgccttttggaaa 3698846  T
Q  411 gtcggcttgttaatcattaatagaaagtaagatgtcattaataaacacagccatgtgat 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3698847 gtcggcttgttaatcattaatagaaagtaagatgtcattaataaacacagccatgtgat 3698905  T

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Target: chr4; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 63 - 255
Target Start/End: Original strand, 3698549 - 3698732
Alignment:
Q  63 tgaatatatttagtagttgattcaaagtattttcatggcttataccctttaggtttgttattagactaattcttgagttgaaaacgggatacacgggatc 162  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||    
T  3698549 tgaatataattagtagttgattcaaagtatttccatggcttataccctttaggtttgttattagactaattcttgagttgaaa---------acgggatc 3698639  T
Q  163 atgcataacaatgtcacgaccttttatatcagatgatcttttacgtaggtttataaacgttgtgtttatgaagattgattttaccatctaaaa 255  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||    
T  3698640 atgcataacaatgtcatgaccttttacatcagatgatcttttacgtaggttcatgaacgttgtgtttatgaagattgattttgccatctaaaa 3698732  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 3698520 - 3698554
Alignment:
Q  19 atcattcctcttgtttaaaacactagctgtgaata 53  Q
    |||||||||||||||||||||||||||||||||||    
T  3698520 atcattcctcttgtttaaaacactagctgtgaata 3698554  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 295
Target Start/End: Original strand, 50001078 - 50001158
Alignment:
Q  215 ataaacgttgtgtttatgaagattgattttaccatctaaaatgatctagtcgcgcagcttattactcgcttgtcttctatt 295  Q
    ||||| |||||||||| ||||||||||||| ||||| |||| |||||||  ||||||||| || | |||||| || |||||    
T  50001078 ataaatgttgtgtttacgaagattgattttgccatccaaaaagatctagcggcgcagcttgttgcccgcttgcctcctatt 50001158  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 208 - 295
Target Start/End: Original strand, 18745099 - 18745186
Alignment:
Q  208 taggtttataaacgttgtgtttatgaagattgattttaccatctaaaatgatctagtcgcgcagcttattactcgcttgtcttctatt 295  Q
    ||||| ||| || ||||||||||| | ||||| |||| ||||| |||| | |||||  |||||||||||| |||||||||||||||||    
T  18745099 taggtctatgaatgttgtgtttataaggattggttttgccatccaaaaaggtctagcggcgcagcttattgctcgcttgtcttctatt 18745186  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 295
Target Start/End: Complemental strand, 28224949 - 28224875
Alignment:
Q  221 gttgtgtttatgaagattgattttaccatctaaaatgatctagtcgcgcagcttattactcgcttgtcttctatt 295  Q
    ||||||||||||||||||  |||| ||||| |||| | |||||  |||||||||||| | ||||||||| |||||    
T  28224949 gttgtgtttatgaagatttgttttgccatccaaaaaggtctagcggcgcagcttattgcccgcttgtctcctatt 28224875  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 208 - 297
Target Start/End: Complemental strand, 28625893 - 28625804
Alignment:
Q  208 taggtttataaacgttgtgtttatgaagattgattttaccatctaaaatgatctagtcgcgcagcttattactcgcttgtcttctattta 297  Q
    ||||| ||| || |||||||||| | ||||||||||| ||||  |||| |||||||  |||||||||||||| || ||| ||||||||||    
T  28625893 taggtctatgaatgttgtgtttacggagattgattttgccattcaaaaagatctagcggcgcagcttattacccgtttgccttctattta 28625804  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 25187103 - 25187163
Alignment:
Q  235 gattgattttaccatctaaaatgatctagtcgcgcagcttattactcgcttgtcttctatt 295  Q
    ||||||||||||||||||||| |||||||  ||||||||| || | |||||| ||||||||    
T  25187103 gattgattttaccatctaaaaagatctagcggcgcagcttgttgcccgcttgccttctatt 25187163  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 277
Target Start/End: Original strand, 45003055 - 45003111
Alignment:
Q  221 gttgtgtttatgaagattgattttaccatctaaaatgatctagtcgcgcagcttatt 277  Q
    |||||||||| ||||||||||||| ||||| |||| | |||||  ||||||||||||    
T  45003055 gttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgcagcttatt 45003111  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 12033380 - 12033304
Alignment:
Q  221 gttgtgtttatgaagattgattttaccatctaaaatgatctagtcgcgcagcttattactcgcttgtcttctattta 297  Q
    |||||||||| || ||||| |||| ||||| |||||||||||   | |||||||||||  | |||||||||||||||    
T  12033380 gttgtgtttacgatgattggttttgccatccaaaatgatctaacggtgcagcttattatccacttgtcttctattta 12033304  T

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