View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15718_low_1 (Length: 780)
Name: NF15718_low_1
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15718_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 176 - 384
Target Start/End: Complemental strand, 55170273 - 55170065
Alignment:
| Q |
176 |
ttaacagacaatcggtcataattagaattagaaattaggaaacaaaaggaaaaggtagtaagtataactgtgagacaggttgatatagatctgtacgtat |
275 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55170273 |
ttaacagacaatctgtcataattagaattagaaattaggaaacaaaaggaaaaggtagtaagtataactgtgagacaggttgatatagatctgtacgtat |
55170174 |
T |
|
| Q |
276 |
ctaaagttggtgtttgtcaatgacaacataataatgttaccaaactccatcaaatgatagccttcattattcatcaacttttaaccaaatattttggaaa |
375 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55170173 |
ctaaagttggtgtttgtcaatgacaaaacaataatgttaccaaactccatcaaatgatagccttcattattcatcaacttttaaccaaatattttggaaa |
55170074 |
T |
|
| Q |
376 |
cggttcagg |
384 |
Q |
| |
|
||||||||| |
|
|
| T |
55170073 |
cggttcagg |
55170065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 14 - 168
Target Start/End: Complemental strand, 55170504 - 55170346
Alignment:
| Q |
14 |
attattctgaaatgaaagaaaatcaagtgcataagaagnnnnnnnctggattcgaatca--atgtaaacacggcaatcatagattgtcacagttgtaacc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
55170504 |
attattctgaaatgaaagaaaatcaagtgcataagaagaaaaaaactggattcgaatcacaatgtaaacacggcaatcatagattgtcccagttgtaacc |
55170405 |
T |
|
| Q |
112 |
tttttgtacttaa--aaaatactatccaaaattatgaatatttgtttgtaaggaccatt |
168 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
55170404 |
tttttgtacttaaaaaaaatactatccaaaattctgaatatttgtttgtaaggaccatt |
55170346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University