View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15718_low_12 (Length: 469)
Name: NF15718_low_12
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15718_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 15 - 450
Target Start/End: Original strand, 35535421 - 35535858
Alignment:
| Q |
15 |
atgaataagtaaaggagacagtggcagtagatagatttaatttaattatacataataagttcatagaagcacccacatcgaaagaattccctagaaactc |
114 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35535421 |
atgaataagtaaaggagacagtagcagtagatagatttaatttaattatacataataagttcatagaagcacccacatcgaaagaattccctagaaactc |
35535520 |
T |
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| Q |
115 |
tcgcaataaagctttcaagcaaccagcaattccatttttcaatgaaaactccattgatgaaagcatagccacatgacatccacgggatttcaggaaaatg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||| |
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| T |
35535521 |
tcgcaataaagctttcaagcaaccagcaattccatttttcaacgaaaactccattgatgaaagcatagccacatgacatccatgggatttcaagaatatg |
35535620 |
T |
|
| Q |
215 |
ccaagctcctcaaatgtcattatgtcatcgacaaactctatgtttcctgccaatcatagttcaatctc--aattttatatagagatataaatggtttttc |
312 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
35535621 |
ccaagctcttcaaatgtcattatgtcatcaacaaactctatgtttcctgccaatcatagttcaatctcagaattttatatagagatataaatggcttttc |
35535720 |
T |
|
| Q |
313 |
attcctcatactagagtacaataccaaaagatattgtactacgtgtatgtagaattggtggactatcaatgaattcataggatttatcaaaaatgtgaaa |
412 |
Q |
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||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| |
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| T |
35535721 |
attcctcatactagagtgcaataccaaaagatattgtactgcgtgtttgtagaattggtggactatcaatgagttcatgggaattatcaaaaatgtgaaa |
35535820 |
T |
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| Q |
413 |
acactaactggtaacaactaatacgctgtacaacttcc |
450 |
Q |
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|| || |||||||||||||||| ||||||||||||||| |
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| T |
35535821 |
acgcttactggtaacaactaatgcgctgtacaacttcc |
35535858 |
T |
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