View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15718_low_18 (Length: 424)
Name: NF15718_low_18
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15718_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 45287109 - 45287530
Alignment:
| Q |
1 |
ccacagatgtatcacttaaatcaccactcttgccatattcctcgtctttataatctttttccacctcatcagcctcattgtaaactggcatcataagggt |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45287109 |
ccacagatgtatcacttaaatcactactcttgccatattcctcgtctttataatctttttccacctcatcagcctcattgtaaacgggcatcataagggt |
45287208 |
T |
|
| Q |
101 |
atcaacacctcttcgtctagatgattctgttggttctcttggaaccttggacctgaaactgtttttggatatgggaatggaagagcagaatacttctttg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45287209 |
atcaacacctcttcgtctagatgattctgttggttctcttggaaccttggacctgaaactgtttttggatatgggaatggaagagcagaatacttctttg |
45287308 |
T |
|
| Q |
201 |
aagttctcaattacccctttgttataagggttgacttgccggtcataccggtatctaaaattttcataagtagactgcacattgaacaaaaggaacaatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
45287309 |
aagttctcaattacccctttgttataagggttgacttgccggtcataccggtatctaaaattttcataagtagactgcacatagaacaaaaggaacaatc |
45287408 |
T |
|
| Q |
301 |
attaacgtatgtaagaaaaatgaactagaaaggaatgagtgttttacaaatgaaatagtaagtagtcgcatttaaggtcaagggattatgagttaaatag |
400 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45287409 |
attaacatatgtaagaaaaatgaactagaaaggaatgagtcttttacaaatgacatattaagtagtcgcatttaaggtcaagggattatgagttaaatag |
45287508 |
T |
|
| Q |
401 |
tgttcaaacctggtctgtgctg |
422 |
Q |
| |
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|||||||||||||| ||||||| |
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| T |
45287509 |
tgttcaaacctggtttgtgctg |
45287530 |
T |
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