View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15718_low_2 (Length: 615)

Name: NF15718_low_2
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15718_low_2
NF15718_low_2
[»] chr7 (4 HSPs)
chr7 (23-467)||(353996-354440)
chr7 (31-160)||(10580686-10580815)
chr7 (34-147)||(10575299-10575412)
chr7 (223-273)||(10580612-10580662)
[»] chr3 (7 HSPs)
chr3 (31-147)||(21584751-21584867)
chr3 (31-146)||(25084951-25085066)
chr3 (31-146)||(24923614-24923729)
chr3 (31-86)||(31825711-31825766)
chr3 (31-147)||(24981958-24982074)
chr3 (31-146)||(24920040-24920155)
chr3 (34-146)||(24497416-24497528)
[»] chr8 (1 HSPs)
chr8 (37-147)||(14261192-14261302)
[»] chr4 (2 HSPs)
chr4 (72-146)||(22898466-22898540)
chr4 (72-146)||(22950134-22950208)


Alignment Details
Target: chr7 (Bit Score: 429; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 23 - 467
Target Start/End: Complemental strand, 354440 - 353996
Alignment:
Q  23 atagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcg 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  354440 atagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgct 354341  T
Q  123 atgtcactttgcacctccctttccttgaccagacattacaaacacacacaatgactcaacactatttggacatgtttctatggagacaactgaaactcat 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354340 atgtcactttgcacctccctttccttgaccagacattacaaacacacacaatgactcaacactatttggacatgtttctatggagacaactgaaactcat 354241  T
Q  223 catttgttatgcgttgaagaatccataacactgctccagcaatgatcacaattatggagtaatagagggaaagaataaagctaattctctactttacagt 322  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354240 catttgttatgcattgaagaatccataacactgctccagcaatgatcacaattatggagtaatagagggaaagaataaagctaattctctactttacagt 354141  T
Q  323 tacataatgtatgaatttcacttgtctccttcccttcaaccttcaacagatcagacataaccaactgcgggtccgagtttctgagtcttttgatcaagct 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  354140 tacataatgtatgaatttcacttgtctccttcccttcaaccttcaatagatcagacataaccaactgcgggtccgagtttctgagtcttctgatcaagct 354041  T
Q  423 tctttgttatagtggcaaacttaaccttcaaaaacaaacatcaca 467  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  354040 tctttgttatagtggcaaacttaaccttcaaaaacaaacatcaca 353996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 31 - 160
Target Start/End: Complemental strand, 10580815 - 10580686
Alignment:
Q  31 aaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcact 130  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  10580815 aaaccactgatcctcttcacaccaactcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcaatatcact 10580716  T
Q  131 ttgcacctccctttccttgaccagacatta 160  Q
    ||||||||||||||| ||||||||||||||    
T  10580715 ttgcacctccctttcattgaccagacatta 10580686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 34 - 147
Target Start/End: Complemental strand, 10575412 - 10575299
Alignment:
Q  34 ccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttg 133  Q
    |||||||| || |||||||| |||||||||||||||| |||||||||||||||||| |||||||| |||||  | |  |||||||||||||||| |||||    
T  10575412 ccactgattcttttcacacctcctcttctcgccaatcgacgaatcgctggctttgtgattccttggatgttgtcacggagaaccttgcgatgtctctttg 10575313  T
Q  134 cacctccctttcct 147  Q
    |||| |||||||||    
T  10575312 cacccccctttcct 10575299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 10580662 - 10580612
Alignment:
Q  223 catttgttatgcgttgaagaatccataacactgctccagcaatgatcacaa 273  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||| ||||    
T  10580662 catttgttatgcgttgaagaatccatgacactgctccaacaatgataacaa 10580612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 7e-26; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 31 - 147
Target Start/End: Original strand, 21584751 - 21584867
Alignment:
Q  31 aaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcact 130  Q
    ||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||| || ||||| ||||||||| | | |||||| || |  |||| ||    
T  21584751 aaaccactgattctcttaacaccacctcttctcgccaatcgacgaatcgctggcttggtgattccctgaatgttatcacgaagaactttcctgtgtctct 21584850  T
Q  131 ttgcacctccctttcct 147  Q
    |||||||||||||||||    
T  21584851 ttgcacctccctttcct 21584867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 31 - 146
Target Start/End: Complemental strand, 25085066 - 25084951
Alignment:
Q  31 aaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcact 130  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| || || || || |||||| | | ||||||||| | ||| | ||    
T  25085066 aaaccactgattctcttcacaccacctcttctcgccaatctacgaatggcaggcttggtgataccctggatgttatcacgaagaacctttctatgcctct 25084967  T
Q  131 ttgcacctccctttcc 146  Q
    ||||||||||||||||    
T  25084966 ttgcacctccctttcc 25084951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 146
Target Start/End: Original strand, 24923614 - 24923729
Alignment:
Q  31 aaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcact 130  Q
    ||||||||||| ||||| |||||||||||||| ||||||| |||||| || ||||| || || || || |||||| | | ||||||||| | ||| | ||    
T  24923614 aaaccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacctttctatgcctct 24923713  T
Q  131 ttgcacctccctttcc 146  Q
    ||||||||||||||||    
T  24923714 ttgcacctccctttcc 24923729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 31825711 - 31825766
Alignment:
Q  31 aaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctt 86  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| || |||||    
T  31825711 aaaccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggctt 31825766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 31 - 147
Target Start/End: Complemental strand, 24982074 - 24981958
Alignment:
Q  31 aaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcact 130  Q
    ||||||||||| ||||| |||||||||||||| ||||||| |||||| || ||||| || || || || |||||| | | |||||| || | ||| | ||    
T  24982074 aaaccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaactttcctatgcctct 24981975  T
Q  131 ttgcacctccctttcct 147  Q
    |||||||||||||||||    
T  24981974 ttgcacctccctttcct 24981958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 146
Target Start/End: Original strand, 24920040 - 24920155
Alignment:
Q  31 aaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcact 130  Q
    ||||| ||||| |||||||||||||||||||| ||||||| |||||| || ||||| || || || || |||||| | | |||||| || | ||| | ||    
T  24920040 aaaccgctgattctcttcacaccacctcttcttgccaatcgacgaattgcaggcttggtgataccctggatgttatcacgaagaactttcctatgcctct 24920139  T
Q  131 ttgcacctccctttcc 146  Q
    ||||||||||||||||    
T  24920140 ttgcacctccctttcc 24920155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 24497416 - 24497528
Alignment:
Q  34 ccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttg 133  Q
    |||||||| ||||| |||||||||||||| ||||||| |||||| || ||||| || || || || |||||  | | ||||||||| | ||| | |||||    
T  24497416 ccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttgtcacgaagaaccttcctatgcctctttg 24497515  T
Q  134 cacctccctttcc 146  Q
    |||||||||||||    
T  24497516 cacctccctttcc 24497528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 37 - 147
Target Start/End: Original strand, 14261192 - 14261302
Alignment:
Q  37 ctgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcac 136  Q
    ||||| ||||||||||| ||||||||||| ||||  ||||||||||||||||| |||||||| |||||  | | ||| || |||||||||| ||||||||    
T  14261192 ctgattctcttcacacctcctcttctcgctaatcgccgaatcgctggctttgtgattccttggatgttgtcacgaagcactttgcgatgtctctttgcac 14261291  T
Q  137 ctccctttcct 147  Q
    |||||||||||    
T  14261292 ctccctttcct 14261302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 72 - 146
Target Start/End: Complemental strand, 22898540 - 22898466
Alignment:
Q  72 acgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccctttcc 146  Q
    |||||||||||||||||||||||| || |||||  | | ||| ||||| ||||||| |||||| || ||||||||    
T  22898540 acgaatcgctggctttgttattccctggatgttgtcacgaagcaccttacgatgtcgctttgctccaccctttcc 22898466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 72 - 146
Target Start/End: Complemental strand, 22950208 - 22950134
Alignment:
Q  72 acgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccctttcc 146  Q
    |||||||||||||||||||||||| || |||||  | | ||| ||||| ||||||| |||||| || ||||||||    
T  22950208 acgaatcgctggctttgttattccctggatgttgtcacgaagcaccttacgatgtcgctttgctccaccctttcc 22950134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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