View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15718_low_21 (Length: 398)

Name: NF15718_low_21
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15718_low_21
NF15718_low_21
[»] chr6 (8 HSPs)
chr6 (1-301)||(33481628-33481931)
chr6 (209-293)||(3066409-3066494)
chr6 (210-272)||(33051359-33051422)
chr6 (208-273)||(19121443-19121509)
chr6 (362-396)||(33482008-33482042)
chr6 (207-271)||(8976996-8977061)
chr6 (223-276)||(27447203-27447256)
chr6 (225-261)||(22681922-22681958)
[»] chr4 (1 HSPs)
chr4 (208-293)||(19462980-19463065)
[»] chr7 (5 HSPs)
chr7 (225-297)||(35858805-35858877)
chr7 (208-257)||(39704318-39704368)
chr7 (215-273)||(7448981-7449040)
chr7 (210-275)||(39445822-39445888)
chr7 (209-276)||(13764926-13764994)
[»] chr1 (3 HSPs)
chr1 (199-293)||(2953291-2953384)
chr1 (210-275)||(42773296-42773362)
chr1 (223-275)||(28237350-28237402)
[»] chr5 (2 HSPs)
chr5 (223-293)||(31941068-31941138)
chr5 (215-275)||(29656066-29656127)
[»] chr8 (2 HSPs)
chr8 (215-275)||(9374612-9374673)
chr8 (238-291)||(27428256-27428309)
[»] chr3 (4 HSPs)
chr3 (210-279)||(38611608-38611677)
chr3 (210-261)||(11396751-11396803)
chr3 (226-276)||(52134621-52134671)
chr3 (210-273)||(13867399-13867463)
[»] scaffold0003 (1 HSPs)
scaffold0003 (223-276)||(40102-40155)


Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 33481628 - 33481931
Alignment:
Q  1 aaaaggatgaaattcatatttt-tcccccttctaaaagcaatatcagatcataggatgaaataaagaattaagtaaacaagttgtttatcattgtctttt 99  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33481628 aaaaggatgaaattcatattttttcccccttctaaaagcaatatcagatcataggatgaaataaagaattaagtaaacaagttgtttatcattgtctttt 33481727  T
Q  100 ctgtaaataagctagaacttgctgtttaattttacaaaggtcggttagatcgatgcacccacaccaaatatcccagcatacaaatcaatgcatttcaaca 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33481728 ctgtaaataagctagaacttgctgtttaattttacaaaggtcggttagatcgatgcacccacaccaaatatcccagcatacaaatcaatgcatttcaaca 33481827  T
Q  200 ttattgacatactaaaactttta-ccgtgctacctcccaggtcataaa-caatggagaagttaacatgttgcaatatgacgctcgtttgttttggaattt 297  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33481828 ttattgacatattaaaacttttacccgtgctaccgcccaggtcataaaccaatggagaagttaacatgttgcaatatgacgctcgtttgttttggaattt 33481927  T
Q  298 cttg 301  Q
    ||||    
T  33481928 cttg 33481931  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 293
Target Start/End: Complemental strand, 3066494 - 3066409
Alignment:
Q  209 tactaaaacttttacc-gtgctacctcccaggtcataaacaatggagaagttaacatgttgcaatatgacgctcgtttgttttgga 293  Q
    ||||| |||||||||| |||||||| ||  |||||||||||||||||||| ||| |||||| |||||||||| ||||| |||||||    
T  3066494 tactagaacttttacccgtgctaccgcctgggtcataaacaatggagaaggtaatatgttgtaatatgacgcccgtttattttgga 3066409  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 272
Target Start/End: Original strand, 33051359 - 33051422
Alignment:
Q  210 actaaaactttta-ccgtgctacctcccaggtcataaacaatggagaagttaacatgttgcaat 272  Q
    |||| |||||||| |||||||||| ||| |||||||||||||||||||| ||| ||||||||||    
T  33051359 actagaacttttatccgtgctaccgcccgggtcataaacaatggagaaggtaatatgttgcaat 33051422  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 19121509 - 19121443
Alignment:
Q  208 atactaaaacttttacc-gtgctacctcccaggtcataaacaatggagaagttaacatgttgcaata 273  Q
    |||||| |||||||||| ||||||||  || ||||||| |||||||||||||||| || ||||||||    
T  19121509 atactagaacttttacccgtgctaccgtccgggtcatagacaatggagaagttaatatattgcaata 19121443  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 396
Target Start/End: Original strand, 33482008 - 33482042
Alignment:
Q  362 tccttcttactaaagatcaaaatatatgattcttc 396  Q
    |||||||||||||||||||| ||||||||||||||    
T  33482008 tccttcttactaaagatcaatatatatgattcttc 33482042  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 271
Target Start/End: Complemental strand, 8977061 - 8976996
Alignment:
Q  207 catactaaaacttttacc-gtgctacctcccaggtcataaacaatggagaagttaacatgttgcaa 271  Q
    ||||||| |||||||||| |||||||| ||| |||||||||||||||| ||| ||| || ||||||    
T  8977061 catactagaacttttacccgtgctaccgcccgggtcataaacaatggaaaagctaatatattgcaa 8976996  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 276
Target Start/End: Complemental strand, 27447256 - 27447203
Alignment:
Q  223 ccgtgctacctcccaggtcataaacaatggagaagttaacatgttgcaatatga 276  Q
    |||||||||| ||| |||||||||||||||| ||| |||||| || ||||||||    
T  27447256 ccgtgctaccgcccgggtcataaacaatggaaaagctaacatattacaatatga 27447203  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 261
Target Start/End: Complemental strand, 22681958 - 22681922
Alignment:
Q  225 gtgctacctcccaggtcataaacaatggagaagttaa 261  Q
    |||||||| |||||||||||||||||||| |||||||    
T  22681958 gtgctaccgcccaggtcataaacaatggaaaagttaa 22681922  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 208 - 293
Target Start/End: Complemental strand, 19463065 - 19462980
Alignment:
Q  208 atactaaaacttttaccgtgctacctcccaggtcataaacaatggagaagttaacatgttgcaatatgacgctcgtttgttttgga 293  Q
    |||||| || ||||||||||||||| ||||||||||||||| |||||||| ||| |||||| |||||||||| ||||| |||||||    
T  19463065 atactagaatttttaccgtgctaccgcccaggtcataaacagtggagaagctaatatgttgtaatatgacgcccgtttattttgga 19462980  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 35858877 - 35858805
Alignment:
Q  225 gtgctacctcccaggtcataaacaatggagaagttaacatgttgcaatatgacgctcgtttgttttggaattt 297  Q
    ||||||||  || |||||||||||||||| ||||||||||||||||| ||||||| | |||||||||||||||    
T  35858877 gtgctaccgtccgggtcataaacaatggaaaagttaacatgttgcaacatgacgcccatttgttttggaattt 35858805  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 39704318 - 39704368
Alignment:
Q  208 atactaaaacttttacc-gtgctacctcccaggtcataaacaatggagaag 257  Q
    |||||| |||||||||| |||||||| ||||||||||||||||||||||||    
T  39704318 atactataacttttacccgtgctaccgcccaggtcataaacaatggagaag 39704368  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 7448981 - 7449040
Alignment:
Q  215 aactttta-ccgtgctacctcccaggtcataaacaatggagaagttaacatgttgcaata 273  Q
    |||||||| |||||||||| |||  ||||||||||||||||||||||| || ||||||||    
T  7448981 aacttttatccgtgctaccgcccgagtcataaacaatggagaagttaatatattgcaata 7449040  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 39445888 - 39445822
Alignment:
Q  210 actaaaacttttacc-gtgctacctcccaggtcataaacaatggagaagttaacatgttgcaatatg 275  Q
    |||| |||||||||| |||||||| ||| |||||||||||| ||||||| ||| |||||| ||||||    
T  39445888 actagaacttttacccgtgctaccgcccgggtcataaacaaaggagaaggtaatatgttgtaatatg 39445822  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 13764994 - 13764926
Alignment:
Q  209 tactaaaacttttacc-gtgctacctcccaggtcataaacaatggagaagttaacatgttgcaatatga 276  Q
    ||||| |||||||||| |||||||| |||  ||||||||||||||| ||| ||| || |||||||||||    
T  13764994 tactagaacttttacccgtgctaccgcccgagtcataaacaatggaaaagctaatatattgcaatatga 13764926  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 293
Target Start/End: Complemental strand, 2953384 - 2953291
Alignment:
Q  199 attattgacatactaaaacttttaccgtgctacctcccaggtcataaacaatggagaagttaacatgttgcaatatgacgctcgtttgttttgga 293  Q
    ||||||||| ||||| ||||||| ||||| |||| |||  ||||||||||||||||||| ||| |||||| |||||||||| | |||||||||||    
T  2953384 attattgac-tactagaacttttcccgtgataccgcccgagtcataaacaatggagaagctaatatgttgtaatatgacgcccttttgttttgga 2953291  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 42773362 - 42773296
Alignment:
Q  210 actaaaacttttacc-gtgctacctcccaggtcataaacaatggagaagttaacatgttgcaatatg 275  Q
    |||| |||||||||| |||||||| ||| |||||||||||| ||||||| ||| |||||||||||||    
T  42773362 actagaacttttacccgtgctaccgcccgggtcataaacaaaggagaaggtaatatgttgcaatatg 42773296  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 28237350 - 28237402
Alignment:
Q  223 ccgtgctacctcccaggtcataaacaatggagaagttaacatgttgcaatatg 275  Q
    |||||||||| ||| |||||||||||| ||||||| ||| |||||||||||||    
T  28237350 ccgtgctaccacccgggtcataaacaaaggagaaggtaatatgttgcaatatg 28237402  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 223 - 293
Target Start/End: Original strand, 31941068 - 31941138
Alignment:
Q  223 ccgtgctacctcccaggtcataaacaatggagaagttaacatgttgcaatatgacgctcgtttgttttgga 293  Q
    |||||||| | || ||||||||||||||||||||| ||| |||||||||||| | || |||||||||||||    
T  31941068 ccgtgctatcgcctaggtcataaacaatggagaagctaatatgttgcaatataatgcccgtttgttttgga 31941138  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 29656066 - 29656127
Alignment:
Q  215 aacttttacc-gtgctacctcccaggtcataaacaatggagaagttaacatgttgcaatatg 275  Q
    |||||||||| |||||||| ||| |||||||||||| ||||||| ||| |||||||||||||    
T  29656066 aacttttacccgtgctaccgcccgggtcataaacaaaggagaaggtaatatgttgcaatatg 29656127  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 9374612 - 9374673
Alignment:
Q  215 aactttta-ccgtgctacctcccaggtcataaacaatggagaagttaacatgttgcaatatg 275  Q
    |||||||| |||||||||| ||| |||||||||||| ||||||| ||| |||||||||||||    
T  9374612 aacttttatccgtgctaccgcccgggtcataaacaaaggagaaggtaatatgttgcaatatg 9374673  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 27428256 - 27428309
Alignment:
Q  238 ggtcataaacaatggagaagttaacatgttgcaatatgacgctcgtttgttttg 291  Q
    |||||||||||||||||||||| | ||||| ||||||||||  |||||| ||||    
T  27428256 ggtcataaacaatggagaagtttatatgttacaatatgacggccgtttggtttg 27428309  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 210 - 279
Target Start/End: Original strand, 38611608 - 38611677
Alignment:
Q  210 actaaaacttttaccgtgctacctcccaggtcataaacaatggagaagttaacatgttgcaatatgacgc 279  Q
    |||| ||||||| ||||| |||| |||  ||||||||||||||||||| ||| |||||| ||||||||||    
T  38611608 actagaacttttcccgtgataccgcccgagtcataaacaatggagaagctaatatgttgtaatatgacgc 38611677  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 11396803 - 11396751
Alignment:
Q  210 actaaaacttttacc-gtgctacctcccaggtcataaacaatggagaagttaa 261  Q
    |||| |||||||||| |||||||| ||| ||||||||||||||||||||||||    
T  11396803 actagaacttttacccgtgctaccgcccgggtcataaacaatggagaagttaa 11396751  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 276
Target Start/End: Complemental strand, 52134671 - 52134621
Alignment:
Q  226 tgctacctcccaggtcataaacaatggagaagttaacatgttgcaatatga 276  Q
    ||||||| ||| |||||||||||||||||||| ||| || |||||||||||    
T  52134671 tgctaccgcccgggtcataaacaatggagaagctaatatattgcaatatga 52134621  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 273
Target Start/End: Original strand, 13867399 - 13867463
Alignment:
Q  210 actaaaacttttac-cgtgctacctcccaggtcataaacaatggagaagttaacatgttgcaata 273  Q
    |||| ||||||||| ||||||||| | | |||||||||||||||||||| ||| || ||||||||    
T  13867399 actagaacttttactcgtgctaccgctcgggtcataaacaatggagaagctaatatattgcaata 13867463  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 276
Target Start/End: Original strand, 40102 - 40155
Alignment:
Q  223 ccgtgctacctcccaggtcataaacaatggagaagttaacatgttgcaatatga 276  Q
    |||||||||| ||| |||||||||||||||| ||| |||||| || ||||||||    
T  40102 ccgtgctaccgcccgggtcataaacaatggaaaagctaacatattacaatatga 40155  T

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