View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15718_low_23 (Length: 383)
Name: NF15718_low_23
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15718_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 113 - 367
Target Start/End: Complemental strand, 4920948 - 4920694
Alignment:
| Q |
113 |
cctgcaagatcaatcctcaagcgtatcgtcctgatcaggcaaaggaattagcacaatactctctgttgaaggaaggaatcttgataacttgtgacttgaa |
212 |
Q |
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| T |
4920948 |
cctgcaagatcaatcctcaagcgtatcgtcctgatcaggcaaaggaataaacacaatactctctgttgaaggaaggaatcttgataacttgtgacttgaa |
4920849 |
T |
|
| Q |
213 |
tgaattaaatttattaaactttcgtatgcttcctcgaaactacagatctttttcattgactcgaatttttacgttgacttgatgaaactttcttgttcat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
4920848 |
tgaattaaatttattaaactttcgtatgcttcctcgaaactacagatctttttcattgactcgaatttttacgttgacttgatgaaacttccctgttcat |
4920749 |
T |
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| Q |
313 |
gcttattcgaacaaaaacgaagaaccttcataccattttcttgttaaaacttcat |
367 |
Q |
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| T |
4920748 |
gcttattcgaacaaaaacgaagaaccttcctaccattttcttgttaaaacttcat |
4920694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 4927124 - 4927079
Alignment:
| Q |
214 |
gaattaaatttattaaactttcgtatgcttcctcgaaactacagat |
259 |
Q |
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| T |
4927124 |
gaattaaatttattaaacttttgtatgcttcctcgaaactacagat |
4927079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 195
Target Start/End: Original strand, 4904756 - 4904837
Alignment:
| Q |
113 |
cctgcaagatcaatcctcaagcg-tatcgtcc-tgatcaggcaaaggaattagcacaatactctctgttgaaggaaggaatcttg |
195 |
Q |
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| T |
4904756 |
cctgcaagttcaatcctcatgtgctatcgtccatgatcag-caaaggaattagctcaatacttt--gttgaaggaaggaatcttg |
4904837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 4921054 - 4921026
Alignment:
| Q |
12 |
gttatttaaaagattttattatccttgat |
40 |
Q |
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| T |
4921054 |
gttatttaaaagattttattatccttgat |
4921026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 237 - 360
Target Start/End: Original strand, 6967067 - 6967189
Alignment:
| Q |
237 |
tatgcttcctcgaaactacagatctttttcattgactcgaatttttacgttgacttgatgaaactttcttgttcatgcttattcgaacaaaaacgaagaa |
336 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| |
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| T |
6967067 |
tatgcttcctcgaaactacatatctttt-cattgactcgaatttttacgttgacttgatgaaacttccttgttcatgcttcttcgagcaaaaacgaagaa |
6967165 |
T |
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| Q |
337 |
ccttcataccattttcttgttaaa |
360 |
Q |
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|||| | |||||||||||||||| |
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| T |
6967166 |
gcttccttccattttcttgttaaa |
6967189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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