View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15718_low_24 (Length: 380)
Name: NF15718_low_24
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15718_low_24 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 21 - 380
Target Start/End: Complemental strand, 11821180 - 11820821
Alignment:
| Q |
21 |
acagttggacaaacaccagcaggaaaaccatgaaccttactcttctcataaattctataataaacttcaccaagtgtagcaccagcttgaacgtaagcaa |
120 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11821180 |
acagttggacacacaccagcaggaaaaccatgaaccttactcttctcataaattctataataaacttcaccaagtgtagcaccaccttgaacgtaagcaa |
11821081 |
T |
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| Q |
121 |
cttcgttctttatatcaacattgattgttctaagattaaacatatcaagtatgataaagggtgattgatttacataagaaataccctcataatcatgtcc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11821080 |
cttcgttctttatatcaacattgattgttctaagattaaacatatcaagtatgataaagggtgattgatttacataagaaataccctcataatcatgtcc |
11820981 |
T |
|
| Q |
221 |
accacttctgattttaatttgaatattgacttgcttggcacatataacagtggattgaacatgtgagggttgttttggagttactatgagtaatggtttt |
320 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11820980 |
accacttctgattttgatttgaatattgacttgcttggcacatataacagtggattgaacatgtgagggttgttttggagttactatgagtaatggtttt |
11820881 |
T |
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| Q |
321 |
gtcgttgaagttgtgttgaaacgtgcgttacgtatgtagtttttaagaacaatggaaaat |
380 |
Q |
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| T |
11820880 |
gtcgttgaagttgtgttgaaacgtgcgttacgtatgtagtttttaagaacaatggaaaat |
11820821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 21 - 380
Target Start/End: Original strand, 11835184 - 11835543
Alignment:
| Q |
21 |
acagttggacaaacaccagcaggaaaaccatgaaccttactcttctcataaattctataataaacttcaccaagtgtagcaccagcttgaacgtaagcaa |
120 |
Q |
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||||||||||| |||||||||||||| |||||||| |||||||| ||| ||||||| || ||||||||||||||||||||||||||||||| ||||||| |
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| T |
11835184 |
acagttggacacacaccagcaggaaatccatgaactttactcttttcagaaattctgtagtaaacttcaccaagtgtagcaccagcttgaatataagcaa |
11835283 |
T |
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| Q |
121 |
cttcgttctttatatcaacattgattgttctaagattaaacatatcaagtatgataaagggtgattgatttacataagaaataccctcataatcatgtcc |
220 |
Q |
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|||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | | || ||||||||||| ||||||||||| |
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| T |
11835284 |
cttcattttttatatcaacattgattgttcttagattaaacatatcaagtatgataaagggttggttagagatgtatgaaataccctcgtaatcatgtcc |
11835383 |
T |
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| Q |
221 |
accacttctgattttaatttgaatattgacttgcttggcacatataacagtggattgaacatgtgagggttgttttggagttactatgagtaatggtttt |
320 |
Q |
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||| ||||| ||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||| || |||||||||||||| |||||||||||||||||| |
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| T |
11835384 |
accgcttcttattttgatttgaatgttgacttgcttagcacatattacagtggattggacatgcgaaggttgttttggagtgactatgagtaatggtttt |
11835483 |
T |
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| Q |
321 |
gtcgttgaagttgtgttgaaacgtgcgttacgtatgtagtttttaagaacaatggaaaat |
380 |
Q |
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| T |
11835484 |
gttattgaagttgtgttgaaacgtgcgttacggatgtagttttgaaggacagtggaaaat |
11835543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 11787211 - 11787292
Alignment:
| Q |
30 |
caaacaccagcaggaaaaccatgaaccttactcttctcataaattctataataaacttcaccaagtgtagcaccagcttgaa |
111 |
Q |
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|||| ||||||||| ||||||||||| | ||| ||||||| ||||||||||||||||| || | |||||||| ||||||| |
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| T |
11787211 |
caaagaccagcagggaaaccatgaacatcacttttctcatgtattctataataaacttcgccgatagtagcaccggcttgaa |
11787292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 11933538 - 11933488
Alignment:
| Q |
191 |
tacataagaaataccctcataatcatgtccaccacttctgattttaatttg |
241 |
Q |
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|||||| |||| ||||||||| ||||||||||||||||| ||||| ||||| |
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| T |
11933538 |
tacataggaaacaccctcatagtcatgtccaccacttctaattttcatttg |
11933488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 11946759 - 11946709
Alignment:
| Q |
191 |
tacataagaaataccctcataatcatgtccaccacttctgattttaatttg |
241 |
Q |
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|||||| |||| ||||||||| ||||||||||||||||| ||||| ||||| |
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| T |
11946759 |
tacataggaaacaccctcatagtcatgtccaccacttctaattttcatttg |
11946709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 11933702 - 11933638
Alignment:
| Q |
27 |
ggacaaacaccagcaggaaaaccatgaaccttactcttctcataaattctataataaacttcacc |
91 |
Q |
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|||||||| || || |||||||||||||| ||||| || |||| ||||||||| |||| |||||| |
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| T |
11933702 |
ggacaaacgccggccggaaaaccatgaactttacttttttcattaattctatagtaaagttcacc |
11933638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 11946923 - 11946859
Alignment:
| Q |
27 |
ggacaaacaccagcaggaaaaccatgaaccttactcttctcataaattctataataaacttcacc |
91 |
Q |
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| T |
11946923 |
ggacaaacgccggccggaaaaccatgaactttacttttttcattaattctatagtaaagttcacc |
11946859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 38090661 - 38090579
Alignment:
| Q |
21 |
acagttggacaaacaccagcaggaaaaccatgaaccttactcttctcataaattctataataaacttcaccaagtgtagcacc |
103 |
Q |
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||||| |||||||| ||||| |||||||||||||| |||| ||||| |||| ||||||||||||||||||| ||||||||| |
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| T |
38090661 |
acagtaggacaaaccccagctggaaaaccatgaacactactaatctcagaaatcctataataaacttcaccaattgtagcacc |
38090579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 38125487 - 38125411
Alignment:
| Q |
29 |
acaaacaccagcaggaaaaccatgaaccttactcttctcataaattctataataaacttcaccaagtgtagcaccag |
105 |
Q |
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|||||| ||||||||||| |||||||| ||||||||||| | || ||||||||||| ||||||||| ||||||||| |
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| T |
38125487 |
acaaaccccagcaggaaagccatgaactttactcttctcccatatcctataataaacctcaccaagtatagcaccag |
38125411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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