View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15718_low_29 (Length: 348)

Name: NF15718_low_29
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15718_low_29
NF15718_low_29
[»] chr2 (3 HSPs)
chr2 (17-168)||(27950678-27950830)
chr2 (170-329)||(27950912-27951071)
chr2 (254-299)||(14150245-14150290)
[»] scaffold0036 (4 HSPs)
scaffold0036 (17-168)||(44068-44220)
scaffold0036 (17-168)||(53471-53618)
scaffold0036 (170-329)||(44302-44461)
scaffold0036 (170-329)||(53700-53859)
[»] chr8 (2 HSPs)
chr8 (25-168)||(17910053-17910200)
chr8 (246-299)||(25939128-25939181)
[»] chr5 (3 HSPs)
chr5 (244-299)||(14489247-14489302)
chr5 (243-299)||(6291543-6291599)
chr5 (244-299)||(28463239-28463294)
[»] chr1 (3 HSPs)
chr1 (246-299)||(12928738-12928791)
chr1 (225-299)||(30091890-30091964)
chr1 (246-299)||(3215151-3215204)
[»] chr7 (2 HSPs)
chr7 (246-300)||(27804622-27804676)
chr7 (246-299)||(28841449-28841502)
[»] chr6 (2 HSPs)
chr6 (244-299)||(12200317-12200372)
chr6 (246-299)||(5477270-5477323)
[»] scaffold1476 (1 HSPs)
scaffold1476 (263-300)||(1242-1279)


Alignment Details
Target: chr2 (Bit Score: 131; Significance: 6e-68; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 17 - 168
Target Start/End: Original strand, 27950678 - 27950830
Alignment:
Q  17 catagggaccgagtgcagatatttttaacctggattaatgtttaatacaaaagcctaaattaaca--atatatactctctttttgtccttaaatatatga 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  27950678 catagggaccgagtgcagatatttttaacctggattaatgtttaatacaaaagcctaaattaacaatatatatactctctttttgtccttaaatatatga 27950777  T
Q  115 ctttttcggagattttgtttctccctaaataagacctaatgcaaatttctagat 168  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  27950778 ctttttcggagattttgtttctcccttaataagacct-atgcaaatttctagat 27950830  T

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Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 170 - 329
Target Start/End: Original strand, 27950912 - 27951071
Alignment:
Q  170 catatctataaataaaagataatttagtaattgtcacacacaaaaaacataaacattcttagctagtattcgtatttttaatgttgtacctctttgtatt 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   ||||||||||||||||||||||||||||||    
T  27950912 catatctataaataaaagataatttagtaattgtcacacacaaaaaacataaacattcttaactagtccccgtatttttaatgttgtacctctttgtatt 27951011  T
Q  270 tcaactttgattaataatgaaaaactataaattannnnnnnnaaaaaataaatatgtata 329  Q
    || |||||||||| ||||||||||||||||||||        ||||||||||||||||||    
T  27951012 tcgactttgattattaatgaaaaactataaattactttttttaaaaaataaatatgtata 27951071  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 14150290 - 14150245
Alignment:
Q  254 tgtacctctttgtatttcaactttgattaataatgaaaaactataa 299  Q
    ||||||||| |||||||  |||||||||||||||||||| ||||||    
T  14150290 tgtacctctatgtattttgactttgattaataatgaaaagctataa 14150245  T

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Target: scaffold0036 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 17 - 168
Target Start/End: Original strand, 44068 - 44220
Alignment:
Q  17 catagggaccgagtgcagatatttttaacctggattaatgtttaatacaaaagcctaaattaaca--atatatactctctttttgtccttaaatatatga 114  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  44068 catagggacagagtgcagatatttttaacctggattaatgtttaatacaaaagcctaaattaacaatatatatactctctttttgtccttaaatatatga 44167  T
Q  115 ctttttcggagattttgtttctccctaaataagacctaatgcaaatttctagat 168  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  44168 ctttttcggagattttgtttctcccttaataagacct-atgcaaatttctagat 44220  T

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Target: scaffold0036; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 17 - 168
Target Start/End: Original strand, 53471 - 53618
Alignment:
Q  17 catagggaccgagtgcagatatttttaacctggattaatgtttaatacaaaagcctaaattaaca--atatatactctctttttgtccttaaatatatga 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||      |||||    
T  53471 catagggaccgagtgcagatatttttaacctggattaatgtttaatacaaaagcctaaattaacaatatatatactctctttttgtcct------tatga 53564  T
Q  115 ctttttcggagattttgtttctccctaaataagacctaatgcaaatttctagat 168  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  53565 ctttttcggagattttgtttctctctaaataagacctaatgcaaatttctagat 53618  T

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Target: scaffold0036; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 170 - 329
Target Start/End: Original strand, 44302 - 44461
Alignment:
Q  170 catatctataaataaaagataatttagtaattgtcacacacaaaaaacataaacattcttagctagtattcgtatttttaatgttgtacctctttgtatt 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   ||||||||||||||||||||||||||||||    
T  44302 catatctataaataaaagataatttagtaattgtcacacacaaaaaacataaacattcttaactagtccccgtatttttaatgttgtacctctttgtatt 44401  T
Q  270 tcaactttgattaataatgaaaaactataaattannnnnnnnaaaaaataaatatgtata 329  Q
    || |||||||||| ||||||||||||||||||||        ||||||||||||||||||    
T  44402 tcgactttgattattaatgaaaaactataaattacttttttaaaaaaataaatatgtata 44461  T

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Target: scaffold0036; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 170 - 329
Target Start/End: Original strand, 53700 - 53859
Alignment:
Q  170 catatctataaataaaagataatttagtaattgtcacacacaaaaaacataaacattcttagctagtattcgtatttttaatgttgtacctctttgtatt 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||| ||||    
T  53700 catatctataaataaaagataatttagtaattgtcacacacaaaaaacataaacattcttagctagtccccgtatttttaatgttgtacctctttatatt 53799  T
Q  270 tcaactttgattaataatgaaaaactataaattannnnnnnnaaaaaataaatatgtata 329  Q
    || |||||||||| |||||||||| |||||||||        ||||||||||||||||||    
T  53800 tcgactttgattattaatgaaaaattataaattacttttttaaaaaaataaatatgtata 53859  T

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Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 25 - 168
Target Start/End: Complemental strand, 17910200 - 17910053
Alignment:
Q  25 ccgagtgcagatatttttaacctggattaatgtttaatacaaaagcctaaattaacaatatata----ctctctttttgtccttaaatatatgacttttt 120  Q
    ||||||| ||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||    |||||||| ||||||||| |||||||||||||    
T  17910200 ccgagtgtagatatttttaacctagattaatgtttaatacaaaaccctaaactaacaatatatatatactctctttatgtccttaattatatgacttttt 17910101  T
Q  121 cggagattttgtttctccctaaataagacctaatgcaaatttctagat 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17910100 cggagattttgtttctccctaaataagacctaatgcaaatttctagat 17910053  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 299
Target Start/End: Original strand, 25939128 - 25939181
Alignment:
Q  246 tttaatgttgtacctctttgtatttcaactttgattaataatgaaaaactataa 299  Q
    |||||||||| ||||||||||||||| ||||||| || ||||||||||||||||    
T  25939128 tttaatgttgcacctctttgtatttcgactttgagtattaatgaaaaactataa 25939181  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 299
Target Start/End: Complemental strand, 14489302 - 14489247
Alignment:
Q  244 tttttaatgttgtacctctttgtatttcaactttgattaataatgaaaaactataa 299  Q
    ||||||||| |||||||||||||||||  || ||||||||||||||||||||||||    
T  14489302 tttttaatgatgtacctctttgtattttgacattgattaataatgaaaaactataa 14489247  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 6291543 - 6291599
Alignment:
Q  243 atttttaatgttgtacctctttgtatttcaactttgattaataatgaaaaactataa 299  Q
    |||||| ||| ||||||||| |||||||  |||||||||||||||||||||||||||    
T  6291543 attttttatgatgtacctctatgtattttgactttgattaataatgaaaaactataa 6291599  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 299
Target Start/End: Original strand, 28463239 - 28463294
Alignment:
Q  244 tttttaatgttgtacctctttgtatttcaactttgattaataatgaaaaactataa 299  Q
    ||||||||| ||||| |||||||||||  || ||||||||||||||||||||||||    
T  28463239 tttttaatgatgtacttctttgtattttgacattgattaataatgaaaaactataa 28463294  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 299
Target Start/End: Original strand, 12928738 - 12928791
Alignment:
Q  246 tttaatgttgtacctctttgtatttcaactttgattaataatgaaaaactataa 299  Q
    |||||||||| ||||||||||||||| |||||||||| ||||||||| ||||||    
T  12928738 tttaatgttgcacctctttgtatttcgactttgattattaatgaaaagctataa 12928791  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 299
Target Start/End: Complemental strand, 30091964 - 30091890
Alignment:
Q  225 ttcttagctagtattcgtatttttaatgttgtacctctttgtatttcaactttgattaataatgaaaaactataa 299  Q
    |||||| ||||| | | ||| |||||||||| ||| ||||||||||| |||||||||| ||||||||| ||||||    
T  30091964 ttcttaactagtctccatatctttaatgttgcaccactttgtatttcgactttgattattaatgaaaagctataa 30091890  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 299
Target Start/End: Original strand, 3215151 - 3215204
Alignment:
Q  246 tttaatgttgtacctctttgtatttcaactttgattaataatgaaaaactataa 299  Q
    ||||||| ||||||||| |||||||  |||||||||||||||||||| ||||||    
T  3215151 tttaatgatgtacctctatgtattttgactttgattaataatgaaaagctataa 3215204  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 300
Target Start/End: Complemental strand, 27804676 - 27804622
Alignment:
Q  246 tttaatgttgtacctctttgtatttcaactttgattaataatgaaaaactataaa 300  Q
    ||||||| ||||||||| |||||||  |||||||||||||||||||| |||||||    
T  27804676 tttaatgatgtacctctatgtattttgactttgattaataatgaaaagctataaa 27804622  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 28841502 - 28841449
Alignment:
Q  246 tttaatgttgtacctctttgtatttcaactttgattaataatgaaaaactataa 299  Q
    ||||||| || |||||||| |||||  |||||||||| ||||||||||||||||    
T  28841502 tttaatgatgcacctctttatattttgactttgattattaatgaaaaactataa 28841449  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 299
Target Start/End: Complemental strand, 12200372 - 12200317
Alignment:
Q  244 tttttaatgttgtacctctttgtatttcaactttgattaataatgaaaaactataa 299  Q
    ||||||||| |||||||||| ||||||  || ||||||||||||||||| ||||||    
T  12200372 tttttaatgatgtacctcttagtattttgacattgattaataatgaaaagctataa 12200317  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 5477323 - 5477270
Alignment:
Q  246 tttaatgttgtacctctttgtatttcaactttgattaataatgaaaaactataa 299  Q
    ||||||| || |||||||||||| |  |||||||||||||||||||| ||||||    
T  5477323 tttaatgatgcacctctttgtatcttgactttgattaataatgaaaagctataa 5477270  T

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Target: scaffold1476 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1476
Description:

Target: scaffold1476; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 300
Target Start/End: Complemental strand, 1279 - 1242
Alignment:
Q  263 ttgtatttcaactttgattaataatgaaaaactataaa 300  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  1279 ttgtatttctactttgattaataatgaaaagctataaa 1242  T

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