View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15718_low_3 (Length: 612)
Name: NF15718_low_3
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15718_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 19 - 612
Target Start/End: Original strand, 4996385 - 4996978
Alignment:
| Q |
19 |
caagaatgattcttcttctggaagtaataatgctttaccccttacactctacctttggctgtgtcttgttcttcacttatggtttctcatgcaaaattct |
118 |
Q |
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| T |
4996385 |
caagaatgattcttcttctggaagtaataatgctttaccccttacactctacctttggctgtgtcttgttcttcacttatggtttctcatgcaaaattct |
4996484 |
T |
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| Q |
119 |
tattgctttcaagtattcactttttcaacttttcaaaagaatccaaatcttaatcacgtttccccctccactttcaaacctttttccaaccgttcatcat |
218 |
Q |
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| T |
4996485 |
tattgatttcaagtaatcactttttcaacttttcaaaagaatccaaatcttaatcacgtttccccctccactttcaaacctttttccaaccgttcatcat |
4996584 |
T |
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| Q |
219 |
tgattgcacacttttctccataataatcccnnnnnnnnncaagaccttttttgttactatcttcaagttcaacaactaaagtgaatcttgtgaactgtct |
318 |
Q |
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| T |
4996585 |
tgattgcacacttttctccataataatcccaaaaaat--caagaccttttttgttactatcttcaagttcaacaactaaagtgaatcttgtgaactgtct |
4996682 |
T |
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| Q |
319 |
ctatcttcatgcatgaataagaggagcttctacttattcacgaggaaaatcactaagaagtgtgtgacgcatactaccaaacttcagcatcttcaactat |
418 |
Q |
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| T |
4996683 |
ctatcttcatgcatgaataagaggagcttctacttattcacgaggaaaatcactaagaagtgtgtgactcatactaccaaactttagcatcttcaactat |
4996782 |
T |
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| Q |
419 |
acaaatacaaaattaacaccccttc-aaaaaacatgatcattctcatcctctcacacacactacc--aaaaattcacaacatgaaaaaactcattttcat |
515 |
Q |
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| T |
4996783 |
acaaatac-aaattaacaccccttcaaaaaaacacgatcattctcatcctctcacacacactaccaaaaaaattcacaacatgaaaaaactcattttcat |
4996881 |
T |
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| Q |
516 |
tcttctcttttcactactatgttcaaatggaaccaccttttcactctcaagagactatgaaattcttcttcatgtaaagaacacacaaattgatgac |
612 |
Q |
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| T |
4996882 |
tcttctcttttcactagtatgttcaaatggaaccaccttttcactctcaagagactatgaaattcttcttcatgtaaagaacacacaaattgatgac |
4996978 |
T |
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