View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15718_low_31 (Length: 341)
Name: NF15718_low_31
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15718_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 20 - 283
Target Start/End: Original strand, 43105382 - 43105651
Alignment:
| Q |
20 |
attctccaaattcttcttcaagtgagagtgag------aatgagagcaaaactggaaatacttgaagtgaagaaagaactaattaattaatgtggtaaat |
113 |
Q |
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| T |
43105382 |
attctccaaattcttcttcaagtgagagtgagaatgagaatgagagcaaaactggaaatacttgaagtgaagaaagaactaattaattaatgtggtaaat |
43105481 |
T |
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| Q |
114 |
tgtatattgtatggtatttgtaccgtgtaggaatagaatgtgacacacaaaaatggtgtccccactaaccccatctgacaacaataacagtctcatattt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43105482 |
tgtatattgtatggtatttgtaccgtgtaggaatagaatgtgacacacaaaaatggtgtccccactaaccccatctgacaacaataacagtctcatattt |
43105581 |
T |
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| Q |
214 |
ggtaggcagtggcaccactttttcattttgttttctgctaataagagaagcaaacgtacgtactcttgtg |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43105582 |
ggtaggcagtggcaccactttttcattttgttttctgctaataagggaagcaaacgtacgtactcttgtg |
43105651 |
T |
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