View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15718_low_33 (Length: 336)
Name: NF15718_low_33
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15718_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 153 - 332
Target Start/End: Original strand, 3809231 - 3809412
Alignment:
| Q |
153 |
ttccatatagctacaggtacatgtttaaagtagaatgacacatattcttcccttttttgtgccctgttatttttagttgata--tatcaattgaatttcg |
250 |
Q |
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| T |
3809231 |
ttccatatagctacatgtacatgtttaaagtagaatgacacatattcttcccttttttgtgct-tgttatttttagttgataaatatcaattgaatttcg |
3809329 |
T |
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| Q |
251 |
atatttttt-ccctttaatcttgtcatgcagactcgttgacaactgaaggaacttccaaaaaacgtcgttttctgaagaatga |
332 |
Q |
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| T |
3809330 |
atatttttttccctataatcttgtcatgcagactcgttgacaactgaaggaacttccaaaaaacgtcgttttctgaagaatga |
3809412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 3809726 - 3809581
Alignment:
| Q |
16 |
tcagagcaagagatagagatcgaaaggtagatcgttttgacaatggaacttgacgcattaactccaaatctaactgaacacgtttccttccacagcgtgt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| | |
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| T |
3809726 |
tcagagcaagagatagagatcgaaaggtagatcgttttgacaatggaacttgacgcattaactccaaatctaactgaacacatttccttccacatcgttt |
3809627 |
T |
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| Q |
116 |
tttcttatgataagcattaccagtctccattacttgtttccatata |
161 |
Q |
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| T |
3809626 |
tttcttatgataagcattaccagtctccattacttgtttccatata |
3809581 |
T |
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