View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15718_low_35 (Length: 330)
Name: NF15718_low_35
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15718_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 93 - 315
Target Start/End: Complemental strand, 12635127 - 12634905
Alignment:
| Q |
93 |
ggtaggccaaaagggggtctctaacattgttgtcgaacccatttgctcaccctcttcgatccaaatcgataccagaatagtaaaacatgcaaaatagtgg |
192 |
Q |
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| T |
12635127 |
ggtaggccaaaagggggtctctaacattgttgtcgaacccatttgctcaccctcttcgatccaaatcgataccagaatagtaaaacatgcaaaatagtgg |
12635028 |
T |
|
| Q |
193 |
taagaacgccacaaaatcgcataaaatcactgtaaaatcgcaggtttttacacgtacctgttacattgattgatacatgtgcaacaaggtctagattgtt |
292 |
Q |
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| T |
12635027 |
taagaatgccgcaaaatcgcataaaatcactgtaaaatcgcaggtttttacacgtacctgttacattgattgatacatgtgcaacaaggtctagattgtt |
12634928 |
T |
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| Q |
293 |
cagattttagaacttataatagc |
315 |
Q |
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||||||||||||||||||||||| |
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| T |
12634927 |
cagattttagaacttataatagc |
12634905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 12635164 - 12635127
Alignment:
| Q |
7 |
ccatgttcgggtaattagtttaattaagcgcttatagg |
44 |
Q |
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| T |
12635164 |
ccatgttcgggtaattagtttaattaagcgcttatagg |
12635127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 134 - 246
Target Start/End: Complemental strand, 35947926 - 35947815
Alignment:
| Q |
134 |
tttgctcaccctcttcgatccaaatcgataccagaatagtaaaacatgcaaaatagtggtaagaacgccacaaaatcgcataaaatcactgtaaaatcgc |
233 |
Q |
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| T |
35947926 |
tttgctcaccctcttcaatccaa-tcgatagtagaataaaaaaaaatgcaaaattgtggtaaggtcccaacaaaatcacatgaaatcgttggaaaatcgt |
35947828 |
T |
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| Q |
234 |
aggtttttacacg |
246 |
Q |
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| T |
35947827 |
aggtttttacacg |
35947815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 52519527 - 52519572
Alignment:
| Q |
174 |
aaaacatgcaaaatagtggtaagaacgccacaaaatcgcataaaat |
219 |
Q |
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| T |
52519527 |
aaaacatgcaaaatcgtggtaagatcgcagcaaaatcgcataaaat |
52519572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 321
Target Start/End: Original strand, 35940929 - 35940978
Alignment:
| Q |
272 |
tgcaacaaggtctagattgttcagattttagaacttataatagcctatgc |
321 |
Q |
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| T |
35940929 |
tgcaacaagaactagattgttcagattttagaaattataattgcatatgc |
35940978 |
T |
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