View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15718_low_36 (Length: 328)
Name: NF15718_low_36
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15718_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 8039491 - 8039256
Alignment:
| Q |
19 |
gatggaggagagctttagaagaa-cacagaaaaactactaggttaaaatttgcatcaagaaatttgagagattggagcac-aaagttttcaagagaa--- |
113 |
Q |
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| T |
8039491 |
gatggaggagacctttagaagaaacacagaaaaactactaggttaaaatttgcatcaagaaatttgagagattggagcaccaaagttttcaagagaagaa |
8039392 |
T |
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| Q |
114 |
tatgttttagaactctcggttattctcaatcaagcatcttttctcaaccaacagatagagaagcaacaatttcgatgaactagtttaggtttttta---- |
209 |
Q |
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| T |
8039391 |
tatgttttagaactctcagttattctcaatcaagcatcttttctcaaccaacaaatagagaagcaacaatttcgatgaactagtttaggttcttaaaaaa |
8039292 |
T |
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| Q |
210 |
---aaaaatagacatgcaagtaataaaaatacaacc |
242 |
Q |
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| T |
8039291 |
aataaaaatagacatgcaagtaataaaaatacaacc |
8039256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 78 - 241
Target Start/End: Complemental strand, 8027331 - 8027162
Alignment:
| Q |
78 |
aatttgagagattggagcac-aaagttttcaagagaatatgttttagaactctcggttattctcaatcaagcatcttttctcaaccaacagatagagaag |
176 |
Q |
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| T |
8027331 |
aatttgagagattgaagcaccaaagttttcaaga--atatgttttagaactcttagttattctcaatcaagcatcttttctcaaccaacaaatagacgag |
8027234 |
T |
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| Q |
177 |
caacaatttcgatgaactagtttaggttttttaaaaa-------atagacatgcaagtaataaaaatacaac |
241 |
Q |
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| T |
8027233 |
caacaatttcgatggattaatttaggttcttaaaaaaaaaaaatatagatatgcaagtaataaaaatacaac |
8027162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 8027374 - 8027332
Alignment:
| Q |
19 |
gatggaggagagctttagaaga-acacagaaaaactactaggt |
60 |
Q |
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| T |
8027374 |
gatggaggggagctttagaagagacacagaaaaactactaggt |
8027332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 49592384 - 49592236
Alignment:
| Q |
25 |
ggagagctttagaaga-acacagaaaaactactaggttaaaatttgcatcaagaaatttgagagattggagca-caaagttttcaagagaatatgtttta |
122 |
Q |
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| T |
49592384 |
ggagagctttggaagagacagaggaaaactgcgagcttagaatttgcatcaagaaatttgagggattttagcaccaaagttttcaa-agaatatgcttta |
49592286 |
T |
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| Q |
123 |
gaactctcggttattctcaatcaagcatcttttctcaaccaacagataga |
172 |
Q |
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| T |
49592285 |
aaactctctaccattctaagtcaatcatcttttctcaaccaacaaataga |
49592236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 25 - 172
Target Start/End: Original strand, 7235661 - 7235809
Alignment:
| Q |
25 |
ggagagctttagaaga-acacagaaaaactactaggttaaaatttgcatcaagaaatttgagagattggagca-caaagttttcaagagaatatgtttta |
122 |
Q |
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|||||||||| ||||| ||| || |||||| | || ||| |||||||||||||||||||||| |||| |||| |||||||||||| |||||||| |||| |
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| T |
7235661 |
ggagagctttggaagagacaaaggaaaactgcgagcttagaatttgcatcaagaaatttgagggattttagcaccaaagttttcaa-agaatatgcttta |
7235759 |
T |
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| Q |
123 |
gaactctcggttattctcaatcaagcatcttttctcaaccaacagataga |
172 |
Q |
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| T |
7235760 |
aaactctcaaccattttaagtcaatcatcttttctcaaccaacaaataga |
7235809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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