View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15718_low_38 (Length: 305)
Name: NF15718_low_38
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15718_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 16 - 282
Target Start/End: Complemental strand, 3809726 - 3809460
Alignment:
| Q |
16 |
tcagagcaagagatagagatcgaaaggtagatcgttttgacaatggaacttgacgcattaactccaaatctaactgaacacgtttccttccacagcgtgt |
115 |
Q |
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| T |
3809726 |
tcagagcaagagatagagatcgaaaggtagatcgttttgacaatggaacttgacgcattaactccaaatctaactgaacacatttccttccacatcgttt |
3809627 |
T |
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| Q |
116 |
tttcttatgataagcattaccagtctccattacttgtttccatatacgaaaaatgatacttctatgaacatcgtatagtaaagctactcgtgatattacc |
215 |
Q |
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| T |
3809626 |
tttcttatgataagcattaccagtctccattacttgtttccatatacgataaatgatacttctatgaacatcgtatagtaaagctgctcgggatattacc |
3809527 |
T |
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| Q |
216 |
cctggactgtgtagttttccatgtccgtcgctcaagctcaacaacaaatgagatatggcctttctat |
282 |
Q |
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| T |
3809526 |
cctggactgtgtagttttccatgtccgtcgctcaagctcaacaacaaatgagatatggcctttctat |
3809460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 3809456 - 3809421
Alignment:
| Q |
221 |
actgtgtagttttccatgtccgtcgctcaagctcaa |
256 |
Q |
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| T |
3809456 |
actgtgtagttttccatgtccatcgctcaagctcaa |
3809421 |
T |
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