View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15718_low_39 (Length: 299)
Name: NF15718_low_39
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15718_low_39 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 109; Significance: 7e-55; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 3804829 - 3804717
Alignment:
| Q |
187 |
gtggtgggagtttgcctacttttttcaatttgaaatccaaatgagaatatcaatagccacaataaaacctatgtattcttgtgaagagggagagacgtgt |
286 |
Q |
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| T |
3804829 |
gtggtgggagtttgcctacttttttcaatttgaaatccaaatgagaatatcaatagccacaataaaacctatgtattcttgtgaagagggagagacgtgt |
3804730 |
T |
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| Q |
287 |
ttgtgatgcttgg |
299 |
Q |
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|||||| |||||| |
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| T |
3804729 |
ttgtgaggcttgg |
3804717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 3805015 - 3804895
Alignment:
| Q |
2 |
cgtaaaagtgaaaggaacattcaaatctatgttaagaggcatttttaactatggctgaaagttcatacaaagctctttttatatagagaatgactggatg |
101 |
Q |
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|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3805015 |
cgtaaaagtgaaagaaacattcaagtctatgttaagaggcatttttaactatggctgaaagttcatacaaagctctttttatatagagaatgactagatg |
3804916 |
T |
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| Q |
102 |
tttaaacttcatttctactct |
122 |
Q |
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| T |
3804915 |
tttaaacttcatttctactct |
3804895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 5164924 - 5165043
Alignment:
| Q |
3 |
gtaaaagtgaaaggaacattcaaatctatgttaagaggcatttttaactatggctgaaagttcatacaaagctctttttatatagagaatgactggatgt |
102 |
Q |
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| T |
5164924 |
gtaaaagtgaaaggaacattcaagtctatgttaagaggcatttttaagtatggctgaaagttcatacaaagctctctttatatagagaatgacgggatgt |
5165023 |
T |
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| Q |
103 |
ttaaacttcatttctactct |
122 |
Q |
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| T |
5165024 |
ttaaacttcatttctactct |
5165043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 8435037 - 8435156
Alignment:
| Q |
3 |
gtaaaagtgaaaggaacattcaaatctatgttaagaggcatttttaactatggctgaaagttcatacaaagctctttttatatagagaatgactggatgt |
102 |
Q |
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| T |
8435037 |
gtaaaagtgaaaggaacattcaagtctatgttaagggacgtttttaagtatggctgaaagttcatacaaagctctctttatatagagaatgactggatgt |
8435136 |
T |
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| Q |
103 |
ttaaacttcatttctactct |
122 |
Q |
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| T |
8435137 |
ttaaacttcatttctactct |
8435156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 5165109 - 5165153
Alignment:
| Q |
187 |
gtggtgggagtttgcctacttttttcaatttgaaatccaaatgag |
231 |
Q |
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| T |
5165109 |
gtggtgggagtttgcctacttttttcaatttgaaatccaaatgag |
5165153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 8435222 - 8435255
Alignment:
| Q |
187 |
gtggtgggagtttgcctacttttttcaatttgaa |
220 |
Q |
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| T |
8435222 |
gtggtgggagtttgcctacttttttcaatttgaa |
8435255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 257 - 298
Target Start/End: Original strand, 27149785 - 27149826
Alignment:
| Q |
257 |
atgtattcttgtgaagagggagagacgtgtttgtgatgcttg |
298 |
Q |
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| T |
27149785 |
atgtattcttgtgaagagggagaggcgtgtttgtgaggcttg |
27149826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 31742405 - 31742524
Alignment:
| Q |
3 |
gtaaaagtgaaaggaacattcaaatctatgttaagaggcatttttaactatggctgaaagttcatacaaagctctttttatatagagaatgactggatgt |
102 |
Q |
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| T |
31742405 |
gtaaaagtgaaaggaacattcaagtctatgttaagaggcatttttaagtatggctgaaagttcatacaaagctctctttatatagagaatgactggatgg |
31742504 |
T |
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| Q |
103 |
ttaaacttcatttctactct |
122 |
Q |
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| T |
31742505 |
ttaaacttcatttctactct |
31742524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 187 - 298
Target Start/End: Original strand, 31742590 - 31742718
Alignment:
| Q |
187 |
gtggtgggagtttgcctacttttttcaatttgaaatccaaa-------tgagaatatcaatagccac----------aataaaacctatgtattcttgtg |
269 |
Q |
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| T |
31742590 |
gtggtgggagtttgcctacttttttcaatttgaaatccaaatgagctgtgagaatatcaatagccacattaaaccataataaaaccgatgtattcttgtg |
31742689 |
T |
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| Q |
270 |
aagagggagagacgtgtttgtgatgcttg |
298 |
Q |
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| T |
31742690 |
aagagggagaggcgtgtttgtgaggcttg |
31742718 |
T |
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