View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15718_low_4 (Length: 600)
Name: NF15718_low_4
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15718_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 17 - 586
Target Start/End: Original strand, 48672107 - 48672676
Alignment:
| Q |
17 |
aaatctgataaaaattcaccatcatcaaacaagccatacattcctaactacaaactagcttttgagcatttttgtgtgcatgctgctagcaaaaccattc |
116 |
Q |
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| T |
48672107 |
aaatctgataaaaattcaccatcatcaaacaagccatacattcctaactacaaactagcttttgagcatttttgtgtgcatgctgccagcaaaaccattc |
48672206 |
T |
|
| Q |
117 |
ttgatgagcttcaaaagaatcttgaattgagtgacaagaacatggaagcttctagaatgacgctgcaccgattcggcaacacttctagtagcagcatttg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48672207 |
ttgatgagcttcaaaagaatcttgaattgagtgacaagaacatggaagcttctagaatgacgctgcaccgattcggcaacacttctagtagcagcatttg |
48672306 |
T |
|
| Q |
217 |
gtatgagcttgcttatatggaagctaaggaaaaagttaaaagaggagaccgtgtttggcaacttgcttttggttctggttttaagtgtaacagtgctgtt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48672307 |
gtatgagcttgcttatatggaagctaaggaaaaagttaaaagaggagaccgtgtttggcaacttgcttttggttctggttttaagtgtaacagtgctgtt |
48672406 |
T |
|
| Q |
317 |
tggcgttcgatgcgtcgtgttacaaaaccttcttctaggaacccttggcttgactgcattgatgcataccctgcttctctcaattaaaaagcacttttat |
416 |
Q |
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| T |
48672407 |
tggcgttcgatgcgtcgtgttacaaaaccttcttctaggaacccttggcttgactgcattgatgcataccctgcttctctcaattaaaaagcacttttat |
48672506 |
T |
|
| Q |
417 |
tattatgatcaatctatgatattgatcagtgatgatgattatgaaattaagacttatttaggatatgaaataatggtagttttagttaagttggtgtttt |
516 |
Q |
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| T |
48672507 |
tattatgatcaatctatgatattgatcagtgatgatgattatgaaattaagacttatttaggatatgaaataatggtagttttagttaagttggtgtttt |
48672606 |
T |
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| Q |
517 |
aaattttaattcctggcttgtgatattgcatactgttacactgaggcatatataacatcatgtgcctttg |
586 |
Q |
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| T |
48672607 |
aaattttaattcctggcttgtgatattgcatactgttacactgaggcatatataacatcatgtgcctttg |
48672676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 319
Target Start/End: Original strand, 15239657 - 15239705
Alignment:
| Q |
271 |
ttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttgg |
319 |
Q |
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| T |
15239657 |
ttggcaaattgcatttggttctggttttaagtgtaatagtgctgtttgg |
15239705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 322
Target Start/End: Original strand, 34053356 - 34053407
Alignment:
| Q |
271 |
ttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttggcgt |
322 |
Q |
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| T |
34053356 |
ttggcaaattgcatttggttctggatttaaatgtaacagtgctgtgtggcgt |
34053407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 319
Target Start/End: Complemental strand, 19742853 - 19742804
Alignment:
| Q |
270 |
tttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttgg |
319 |
Q |
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|||||||| |||| ||||| ||||| ||||||||||||| |||||||||| |
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| T |
19742853 |
tttggcaaattgcatttgggtctggatttaagtgtaacactgctgtttgg |
19742804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 319
Target Start/End: Original strand, 19797235 - 19797284
Alignment:
| Q |
270 |
tttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttgg |
319 |
Q |
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|||||||| |||| ||||| ||||| ||||||||||||| |||||||||| |
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| T |
19797235 |
tttggcaaattgcatttgggtctggatttaagtgtaacactgctgtttgg |
19797284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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