View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15718_low_45 (Length: 276)

Name: NF15718_low_45
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15718_low_45
NF15718_low_45
[»] chr7 (9 HSPs)
chr7 (3-263)||(41089826-41090086)
chr7 (3-74)||(38306193-38306264)
chr7 (3-71)||(47325963-47326031)
chr7 (3-74)||(3419734-3419805)
chr7 (3-63)||(25160758-25160818)
chr7 (3-73)||(5860366-5860436)
chr7 (3-53)||(10244135-10244185)
chr7 (3-95)||(3867027-3867119)
chr7 (3-69)||(33435047-33435112)
[»] chr3 (6 HSPs)
chr3 (4-74)||(20611715-20611785)
chr3 (3-74)||(2392584-2392655)
chr3 (3-74)||(2394331-2394402)
chr3 (3-74)||(34475832-34475903)
chr3 (3-74)||(47235648-47235719)
chr3 (3-74)||(19176435-19176505)
[»] chr5 (5 HSPs)
chr5 (3-72)||(698295-698364)
chr5 (3-72)||(18593177-18593246)
chr5 (3-74)||(34378030-34378101)
chr5 (15-74)||(29087413-29087472)
chr5 (14-74)||(7392120-7392179)
[»] chr8 (8 HSPs)
chr8 (3-74)||(9519431-9519502)
chr8 (3-74)||(36630769-36630840)
chr8 (3-72)||(32066373-32066442)
chr8 (3-74)||(24995473-24995544)
chr8 (3-74)||(34389083-34389154)
chr8 (3-61)||(37986936-37986994)
chr8 (3-56)||(31207440-31207492)
chr8 (16-63)||(10248644-10248691)
[»] chr4 (4 HSPs)
chr4 (3-74)||(30964373-30964444)
chr4 (3-74)||(8254959-8255030)
chr4 (3-74)||(8268377-8268448)
chr4 (3-72)||(4305659-4305728)
[»] chr2 (2 HSPs)
chr2 (3-74)||(39338943-39339014)
chr2 (3-72)||(10524031-10524100)
[»] chr1 (9 HSPs)
chr1 (3-74)||(5389499-5389570)
chr1 (3-74)||(24450008-24450079)
chr1 (3-74)||(41920385-41920455)
chr1 (3-73)||(30685982-30686052)
chr1 (3-72)||(46692897-46692966)
chr1 (3-74)||(31585838-31585909)
chr1 (1-74)||(24684554-24684626)
chr1 (3-51)||(20113599-20113647)
chr1 (3-43)||(24658892-24658932)
[»] chr6 (3 HSPs)
chr6 (3-74)||(16510379-16510450)
chr6 (3-61)||(3117438-3117496)
chr6 (14-63)||(20701892-20701941)
[»] scaffold0068 (1 HSPs)
scaffold0068 (3-72)||(35849-35919)


Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 3 - 263
Target Start/End: Original strand, 41089826 - 41090086
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgcagcaaaaccccatctctcaatctcattcaac 102  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||| | |||||| ||||| ||||||||||||    
T  41089826 caaattagcagagcacccctcgcccccgatacaccagagaaaaaccaaatcaagtcaaacaaagattgtagctagaccccaactctcgatctcattcaac 41089925  T
Q  103 aaaatatcaggttatactaaccaagactcaaatcaaataaatttgcttctactnnnnnnnnnnnnnnnnnngttcgctgaccatatgaaaagttcattag 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||||||||    
T  41089926 aaaatatcaggttatactaaccaagactcaaatcaaataaatttgcttctactaaaataaaaaatataaaagttcgctgaccatatgaaaagttcattag 41090025  T
Q  203 taccatcgttctataataaatacactcttacgaattataaggaaaaacatttaagaataat 263  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41090026 taccatcgttctataataaatacactcttatgaattataaggaaaaacatttaagaataat 41090086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 38306264 - 38306193
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgcagc 74  Q
    |||||||||| ||||||||||||||||  ||||||||||||||||||||||||| |||||| ||||||||||    
T  38306264 caaattagcagggcacccctcgccccctgtacaccagagaaaaaccaaatcaagtcaaacaaagattgcagc 38306193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 47325963 - 47326031
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgc 71  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||  ||||| |||||||    
T  47325963 caaattagcaaggcacccctcgcccccggtacaccagagaaaaaccaaatcaagttaaacaaagattgc 47326031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 3419734 - 3419805
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgcagc 74  Q
    ||||||| || ||||||||||||||||| || |||||||||||||||||||||| |||||| ||||||||||    
T  3419734 caaattaacagggcacccctcgcccccggtataccagagaaaaaccaaatcaagtcaaacaaagattgcagc 3419805  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 25160818 - 25160758
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaaca 63  Q
    |||||||||| |||||||||||||| || |||||||||||||||||||| |||| ||||||    
T  25160818 caaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaaca 25160758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 5860366 - 5860436
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgcag 73  Q
    |||||||||| ||||||||||||||||| ||||  |||||||||||||||  || |||||| |||||||||    
T  5860366 caaattagcagggcacccctcgcccccggtacagtagagaaaaaccaaattcagccaaacaaagattgcag 5860436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 10244185 - 10244135
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatc 53  Q
    |||||||||| |||||||||| |||||| ||||||||||||||||||||||    
T  10244185 caaattagcagggcacccctctcccccggtacaccagagaaaaaccaaatc 10244135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 3867119 - 3867027
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgcagcaaaaccccatctctcaatctc 95  Q
    |||||||||| | ||||| |||||| || |||||||||||||||||| |||||| |||||| |||||| ||| | |||||  ||||| |||||    
T  3867119 caaattagcaggccacccttcgccctcggtacaccagagaaaaaccatatcaagtcaaacaaagattgtagctagaccccgactctcgatctc 3867027  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 33435112 - 33435047
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagatt 69  Q
    ||||||| || ||||||||||||||||| |||||||||| ||||||||||||||  ||||| |||||    
T  33435112 caaattaacagggcacccctcgcccccggtacaccagag-aaaaccaaatcaagctaaacaaagatt 33435047  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 20611785 - 20611715
Alignment:
Q  4 aaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgcagc 74  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||    
T  20611785 aaattagcagggcacccctcgcccccggtacaccagagaaaaaccaaatcaagtcaaacaaagattgcagc 20611715  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 2392584 - 2392655
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgcagc 74  Q
    |||||||||| ||||||||||||||||| |||||||||| ||||||||| |||| |||||| ||||||||||    
T  2392584 caaattagcagggcacccctcgcccccggtacaccagagtaaaaccaaaccaagtcaaacaaagattgcagc 2392655  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 2394331 - 2394402
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgcagc 74  Q
    |||||||||| ||||||||||||||||| |||||||||| ||||||||| |||| |||||| ||||||||||    
T  2394331 caaattagcagggcacccctcgcccccggtacaccagagtaaaaccaaaccaagtcaaacaaagattgcagc 2394402  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 34475832 - 34475903
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgcagc 74  Q
    |||||||||| ||||||||||||||||| ||||||||||||||| |||| |||| |||||| | ||||||||    
T  34475832 caaattagcagggcacccctcgcccccggtacaccagagaaaaatcaaaccaagtcaaacaaaaattgcagc 34475903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 47235719 - 47235648
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgcagc 74  Q
    |||||||||| ||||||||||||||||| |||||  ||||||||||||| |||| |||||| ||||||||||    
T  47235719 caaattagcagggcacccctcgcccccggtacactggagaaaaaccaaaccaagtcaaacaaagattgcagc 47235648  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 19176505 - 19176435
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgcagc 74  Q
    |||||||||| ||||||| || | |||| |||| |||||||||||||||| ||| |||||| ||||||||||    
T  19176505 caaattagcagggcaccc-tcactcccggtacatcagagaaaaaccaaattaagtcaaacaaagattgcagc 19176435  T

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Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 698364 - 698295
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgca 72  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||    
T  698364 caaattagcagggcacccctcgcccccggtacaccagagaaaaaccaaatcaagtcaaacaaagattgca 698295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 18593246 - 18593177
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgca 72  Q
    |||||||||| |||| |||||||||||| ||||| ||||||||||||||||||| |||||| ||||||||    
T  18593246 caaattagcagggcatccctcgcccccggtacacgagagaaaaaccaaatcaagtcaaacaaagattgca 18593177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 34378101 - 34378030
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgcagc 74  Q
    |||||||||| ||||| ||| ||||||| |||||||||||||| |||||||||| |||||| ||||||||||    
T  34378101 caaattagcagggcactccttgcccccggtacaccagagaaaacccaaatcaagtcaaacaaagattgcagc 34378030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 29087472 - 29087413
Alignment:
Q  15 gcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgcagc 74  Q
    |||||||||||||||| |||| |||||||  |||||| |||| |||||| ||||||||||    
T  29087472 gcacccctcgcccccggtacaacagagaattaccaaaacaagtcaaacaaagattgcagc 29087413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 7392120 - 7392179
Alignment:
Q  14 ggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgcagc 74  Q
    |||||||||| ||| || |||| |||||||| ||||||||||| |||||| ||||||||||    
T  7392120 ggcacccctcaccctcggtacatcagagaaacaccaaatcaagccaaaca-agattgcagc 7392179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 9519502 - 9519431
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgcagc 74  Q
    |||||||||| |||||||||| |||||| ||||||||||||||||||||||||| |||||| ||||||||||    
T  9519502 caaattagcagggcacccctcacccccggtacaccagagaaaaaccaaatcaagtcaaacaaagattgcagc 9519431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 36630840 - 36630769
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgcagc 74  Q
    |||||||||| ||||||||||||||||| ||||||| ||||||||||||||||| |||||| ||||||||||    
T  36630840 caaattagcagggcacccctcgcccccggtacaccaaagaaaaaccaaatcaagtcaaacaaagattgcagc 36630769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 32066373 - 32066442
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgca 72  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||||||||||||| |||||| ||||||||    
T  32066373 caaattagcagggcacccctcgcccccggtacactagagaaaaaccaaatcaagtcaaacaaagattgca 32066442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 24995473 - 24995544
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgcagc 74  Q
    |||||||||| | ||||||||||||||  ||||||||||||||||||||||||| |||||| ||||||||||    
T  24995473 caaattagcaagacacccctcgcccccagtacaccagagaaaaaccaaatcaagtcaaacaaagattgcagc 24995544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 34389083 - 34389154
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgcagc 74  Q
    |||||||||| ||||||||||||||| | ||||||||||||||||||||||||| |||||| | ||||||||    
T  34389083 caaattagcagggcacccctcgcccctggtacaccagagaaaaaccaaatcaagtcaaacaaaaattgcagc 34389154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 37986936 - 37986994
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaa 61  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  37986936 caaattagcagggcacccctcgcccccggtacaccagagaaaaaccaaatcaagtcaaa 37986994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 31207440 - 31207492
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaag 56  Q
    |||||||||| ||||||| ||||||| | |||||||||||||||||||||||||    
T  31207440 caaattagcagggcaccc-tcgcccctggtacaccagagaaaaaccaaatcaag 31207492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 10248644 - 10248691
Alignment:
Q  16 cacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaaca 63  Q
    |||||||| |||||| ||||||||||||| ||||||||||| ||||||    
T  10248644 cacccctcacccccggtacaccagagaaacaccaaatcaagccaaaca 10248691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 30964444 - 30964373
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgcagc 74  Q
    |||||||||| |||||||||||||| || ||||||||||||||||||||||||| |||||| ||||||||||    
T  30964444 caaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaatcaagtcaaacaaagattgcagc 30964373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 8255030 - 8254959
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgcagc 74  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||  ||||| ||||| ||||    
T  8255030 caaattagcagggcacccctcgcccccggtacaccagagaaaaaccaaatcaagtgaaacaaagattacagc 8254959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 8268448 - 8268377
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgcagc 74  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||  ||||| ||||| ||||    
T  8268448 caaattagcagggcacccctcgcccccggtacaccagagaaaaaccaaatcaagtgaaacaaagattacagc 8268377  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 4305728 - 4305659
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgca 72  Q
    |||||||||| |||||| || ||||||| |||||||||||||||| ||||| || |||||| ||||||||    
T  4305728 caaattagcagggcaccgcttgcccccggtacaccagagaaaaacgaaatccagtcaaacaaagattgca 4305659  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 39338943 - 39339014
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgcagc 74  Q
    |||||||||| ||||||||||||||||| ||||||| ||||||||||||||||| |||||| | ||||||||    
T  39338943 caaattagcagggcacccctcgcccccggtacaccaaagaaaaaccaaatcaagtcaaacaaatattgcagc 39339014  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 10524100 - 10524031
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgca 72  Q
    |||||| ||| |||||| |||||||||  || |||||||||||||||||||||| |||||| ||||||||    
T  10524100 caaattggcagggcacctctcgcccccagtagaccagagaaaaaccaaatcaagtcaaacaaagattgca 10524031  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 5389499 - 5389570
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgcagc 74  Q
    |||||||||  ||||||||||||||||| ||||||||||||||| ||||||||| |||||| ||||||||||    
T  5389499 caaattagctgggcacccctcgcccccggtacaccagagaaaaatcaaatcaagtcaaacaaagattgcagc 5389570  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 24450008 - 24450079
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgcagc 74  Q
    |||| ||||| ||||||||||||||||| |||||||||||||||||||| |||| |||||| ||||||||||    
T  24450008 caaaatagcagggcacccctcgcccccggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagc 24450079  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 41920455 - 41920385
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgcagc 74  Q
    |||||||||| ||||||||||||||| | ||||||||||||||||||||||||| |||||| ||||||||||    
T  41920455 caaattagcagggcacccctcgccccag-tacaccagagaaaaaccaaatcaagtcaaacaaagattgcagc 41920385  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 30685982 - 30686052
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgcag 73  Q
    |||||||||| ||||||||||||||| | ||||||||||||||||||||||||| ||||||  ||||||||    
T  30685982 caaattagcagggcacccctcgccccaggtacaccagagaaaaaccaaatcaagtcaaacaaggattgcag 30686052  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 46692897 - 46692966
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgca 72  Q
    |||||||||| |||||| |||||||||| ||||||||||||||| ||||||||| |||||| ||||||||    
T  46692897 caaattagcagggcacctctcgcccccggtacaccagagaaaaatcaaatcaagtcaaacaaagattgca 46692966  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 31585838 - 31585909
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgcagc 74  Q
    |||||||||| |||||||||| ||| |  ||||||||||||||||||||||||| |||||| ||||||||||    
T  31585838 caaattagcagggcacccctcaccctcagtacaccagagaaaaaccaaatcaagtcaaacaaagattgcagc 31585909  T

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Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 24684554 - 24684626
Alignment:
Q  1 atcaaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgcagc 74  Q
    |||||||||| | ||||||||||||||||| |||||||||| |||||||||||||| |||||| ||||| ||||    
T  24684554 atcaaattagtagggcacccctcgcccccggtacaccagag-aaaaccaaatcaagtcaaacaaagattacagc 24684626  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 20113599 - 20113647
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaa 51  Q
    |||||||||| ||||||||||||||||| |||||| |||||||||||||    
T  20113599 caaattagcagggcacccctcgcccccggtacacccgagaaaaaccaaa 20113647  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 24658932 - 24658892
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaa 43  Q
    ||||| |||| ||||||||| ||||||||||||||||||||    
T  24658932 caaatcagcagggcaccccttgcccccgatacaccagagaa 24658892  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 16510379 - 16510450
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaacagagattgcagc 74  Q
    |||||||||| ||||||||| |||| || |||||||||||||||||| |||||| |||||| ||||||||||    
T  16510379 caaattagcagggcaccccttgccctcggtacaccagagaaaaaccatatcaagtcaaacaaagattgcagc 16510450  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 3117496 - 3117438
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaa 61  Q
    |||||||||| |||||||||||||||||  |||||||||||||||||||||||| ||||    
T  3117496 caaattagcagggcacccctcgcccccggaacaccagagaaaaaccaaatcaagtcaaa 3117438  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 20701892 - 20701941
Alignment:
Q  14 ggcacccctcgcccccgatacaccagagaaaaaccaaatcaaggcaaaca 63  Q
    |||||||||| |||||| ||||||||||||||||||||||| | ||||||    
T  20701892 ggcacccctcacccccggtacaccagagaaaaaccaaatcacgccaaaca 20701941  T

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Target: scaffold0068 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 35849 - 35919
Alignment:
Q  3 caaattagcatggcacccctcgcccccgatacaccagagaaaaacc-aaatcaaggcaaacagagattgca 72  Q
    |||||||||  ||||||||||||||||| ||||||||||||||||| |||| ||| |||||| ||||||||    
T  35849 caaattagctaggcacccctcgcccccggtacaccagagaaaaaccaaaattaagtcaaacaaagattgca 35919  T

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