View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15718_low_46 (Length: 274)
Name: NF15718_low_46
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15718_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 104 - 255
Target Start/End: Original strand, 42339366 - 42339517
Alignment:
| Q |
104 |
catcgataggacaattgcaatgtacaacggtcgtatagcctactaccaacgtgaggtcctaatagaaaagaaatgcttgaaagaccaacaagagacgtta |
203 |
Q |
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| T |
42339366 |
catcgataggacaattgcaatgtacaacagtcgtataacctactaccaacgtgaggtcctaatagaaaagaaatgcttggaagaccaacaagagacgtta |
42339465 |
T |
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| Q |
204 |
cttatggctcaatctatatcgaaatgctttgatggtggtagatcgagcagtg |
255 |
Q |
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| T |
42339466 |
cttatggctcaatctaatttgaaatgctttgatggtggtagaacgagcagtg |
42339517 |
T |
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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 42339262 - 42339314
Alignment:
| Q |
1 |
cccttataaagtttattatgatgacccaggtgcggtggtgcgataaatatggc |
53 |
Q |
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| T |
42339262 |
cccttataaagtttattatgatgacctaggtgcggtggtgcgataaatatggc |
42339314 |
T |
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