View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15718_low_47 (Length: 268)
Name: NF15718_low_47
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15718_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 249
Target Start/End: Complemental strand, 1492809 - 1492575
Alignment:
| Q |
15 |
aatatttacacaaatagattttactttgagacatttgtacaaataaatatacctgaggaatgcaaagacttgcaatggtgagtccagcaatcaaatcacc |
114 |
Q |
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| T |
1492809 |
aatatttacacaaatagattttactttgagacatttgtacaaataaatatacctgaggaatgcaaagacttgcaatggtgagtccagaaatcaaatcacc |
1492710 |
T |
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| Q |
115 |
cttgaaacttttaagattgtaacctcttccccattccaaaatagggaaaacagattggagtccaagaacaaactttcttttctttgtttggtctttaaac |
214 |
Q |
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| T |
1492709 |
cttgaaacttttaagattgtaacctcttccccattccaaaatagggaaaacagattggagtccaagaacaaactttcttttctttgtttggtctttaaac |
1492610 |
T |
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| Q |
215 |
ttggcaaaagggtcatctgagaagaaagtttcatt |
249 |
Q |
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| T |
1492609 |
ttggcaaaagggtcatctgagaagaaagtttcatt |
1492575 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 147
Target Start/End: Complemental strand, 33297972 - 33297889
Alignment:
| Q |
64 |
tacctgaggaatgcaaagacttgcaatggtgagtccagcaatcaaatcacccttgaaacttttaagattgtaacctcttcccca |
147 |
Q |
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| T |
33297972 |
tacctgaggtatgcaaagacttgcaatagtgagaccagcaattatatctcccctaaattttttaagattgtaacttctccccca |
33297889 |
T |
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