View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15718_low_5 (Length: 598)

Name: NF15718_low_5
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15718_low_5
NF15718_low_5
[»] chr1 (7 HSPs)
chr1 (213-477)||(22822556-22822820)
chr1 (16-166)||(22840627-22840773)
chr1 (543-579)||(22822464-22822500)
chr1 (194-233)||(22822827-22822866)
chr1 (425-478)||(22851484-22851537)
chr1 (425-478)||(23479320-23479373)
chr1 (425-478)||(22853608-22853661)
[»] scaffold0520 (1 HSPs)
scaffold0520 (283-372)||(6002-6092)
[»] chr8 (2 HSPs)
chr8 (425-478)||(8364943-8364996)
chr8 (425-478)||(20468357-20468410)
[»] chr5 (1 HSPs)
chr5 (449-478)||(19766093-19766122)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 213 - 477
Target Start/End: Complemental strand, 22822820 - 22822556
Alignment:
Q  213 tgctatatgttggatatgttttgtgcttgctacatgttataagtttcatggggagctaaaatcaacttaatcaatatgtgctattttgacatcatcaaaa 312  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| | |||||||||||||||||    
T  22822820 tgctaaatgctggatatgttttgtgcttgctacatgttataagtttcacggggagctaaaatcaacttaatcaacatgtgttcttttgacatcatcaaaa 22822721  T
Q  313 ggggggagattgaagcatctggctaatttttgatgttgttagcttttagcttatagattaattgtgttgtgcattatatgttgatcaacccaaacaaata 412  Q
     ||||||||||||||| |||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  22822720 agggggagattgaagcctctaactagtttttgatgttgttagcttttagcttatagattaattgtgttgtgcattatatcttgatcagcccaaacaaata 22822621  T
Q  413 tatatataaaattttgaaattgttttcttaatattttgcaacttgtttacaatatgagtaaatct 477  Q
    ||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||    
T  22822620 tatatataaaattttgaaattgttttactaagattttgcaacttgtttacaatatgagtaaatct 22822556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 22840627 - 22840773
Alignment:
Q  16 ggaaggagatgcagaaatgcatgaggttgaggatgacaatgatcctgacattgttgaagatcagcagggtgttggagcacaaatgactgacatgactcaa 115  Q
    ||||||||||||||||||||||||||    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22840627 ggaaggagatgcagaaatgcatgagg----ggatgacaatgatcctgacattgttgacgatcagcagggtgttggagcacaaatgactgacatgactcaa 22840722  T
Q  116 gttttagctaatatcagcgaccttaaggcctacatgatacaaacgttcaat 166  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  22840723 gttttagctagtatcagtgaccttaaggcctacatgatacaaacgttcaat 22840773  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 543 - 579
Target Start/End: Complemental strand, 22822500 - 22822464
Alignment:
Q  543 cgtcatcaccctcattttcgtttctcgatgtctcctt 579  Q
    |||||||||||||||||||||||||||||||||||||    
T  22822500 cgtcatcaccctcattttcgtttctcgatgtctcctt 22822464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 194 - 233
Target Start/End: Complemental strand, 22822866 - 22822827
Alignment:
Q  194 atgtgtatggcttgctaaatgctatatgttggatatgttt 233  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  22822866 atgtgtatggcttgctaaatgttatatgttggatatgttt 22822827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 425 - 478
Target Start/End: Original strand, 22851484 - 22851537
Alignment:
Q  425 tttgaaattgttttcttaatattttgcaacttgtttacaatatgagtaaatctc 478  Q
    ||||||||||||||   ||  |||||||||||||||||||||||||||||||||    
T  22851484 tttgaaattgttttaccaaggttttgcaacttgtttacaatatgagtaaatctc 22851537  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 425 - 478
Target Start/End: Complemental strand, 23479373 - 23479320
Alignment:
Q  425 tttgaaattgttttcttaatattttgcaacttgtttacaatatgagtaaatctc 478  Q
    ||||||||||||||   ||  |||||||||||||||||||||||||||||||||    
T  23479373 tttgaaattgttttaccaaggttttgcaacttgtttacaatatgagtaaatctc 23479320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 478
Target Start/End: Original strand, 22853608 - 22853661
Alignment:
Q  425 tttgaaattgttttcttaatattttgcaacttgtttacaatatgagtaaatctc 478  Q
    ||||||||||||||   ||  ||||||||||| |||||||||||||||||||||    
T  22853608 tttgaaattgttttaccaaggttttgcaacttatttacaatatgagtaaatctc 22853661  T

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Target: scaffold0520 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 283 - 372
Target Start/End: Original strand, 6002 - 6092
Alignment:
Q  283 tcaatatgtgctattttgacatcatcaaaaggggggagattgaagcatctggcta-atttttgatgttgttagcttttagcttatagatta 372  Q
    |||| ||||||| ||||||||||||||||| | ||||||||||||| ||  |||| | |||||||| ||||||||||||| || |||||||    
T  6002 tcaacatgtgctcttttgacatcatcaaaaagagggagattgaagcctccagctatagttttgatgatgttagcttttagattctagatta 6092  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 425 - 478
Target Start/End: Original strand, 8364943 - 8364996
Alignment:
Q  425 tttgaaattgttttcttaatattttgcaacttgtttacaatatgagtaaatctc 478  Q
    ||||||||||||||   ||  |||||||||||||||||||||||||||||||||    
T  8364943 tttgaaattgttttaccaaggttttgcaacttgtttacaatatgagtaaatctc 8364996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 478
Target Start/End: Original strand, 20468357 - 20468410
Alignment:
Q  425 tttgaaattgttttcttaatattttgcaacttgtttacaatatgagtaaatctc 478  Q
    ||||||||||||||   ||  |||||||||||||||| ||||||||||||||||    
T  20468357 tttgaaattgttttaccaaggttttgcaacttgtttataatatgagtaaatctc 20468410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 478
Target Start/End: Complemental strand, 19766122 - 19766093
Alignment:
Q  449 tgcaacttgtttacaatatgagtaaatctc 478  Q
    ||||||||||||||||||||||||||||||    
T  19766122 tgcaacttgtttacaatatgagtaaatctc 19766093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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