View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15718_low_51 (Length: 267)
Name: NF15718_low_51
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15718_low_51 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 29480047 - 29479791
Alignment:
| Q |
1 |
tttaactataaattctaaaagttgaaaataaggtgg---gacacatatggggtctttctaggagaccggatgaaggattttggtgcaagtgtttgatgaa |
97 |
Q |
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| T |
29480047 |
tttaactataaattttaaaagttgaaaataaggtggtgggacacatatggggtctttctaggagatcggaggaaggattttggtgcaagtgtttgatgaa |
29479948 |
T |
|
| Q |
98 |
ttagaagtcttatattagatnnnnnnnnnnnn---gtgagtgttgaaatatattagtgcgagaatccataaacttaataataccttaagattttgagtta |
194 |
Q |
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| T |
29479947 |
ttagaagtcttatattagataaaataaaataaaaagtgagtgttaaaatatataagtgcgagaatccataaacttaataatacctttagattttgagtca |
29479848 |
T |
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| Q |
195 |
agatgtgtgtcgaattcacttgttcttttgtcccaaagtgaatgatccccaaacttc |
251 |
Q |
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| T |
29479847 |
agatgtgtgtcgaattcacttgttcttttgttccaacgtgaatgatcctcaaacttc |
29479791 |
T |
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