View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15718_low_52 (Length: 259)
Name: NF15718_low_52
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15718_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 58 - 245
Target Start/End: Original strand, 27354581 - 27354762
Alignment:
| Q |
58 |
cagcaccgtttactctctcaactaagacttcaaactggttgtcttttgtttcaataaagtggcataacgggtaatctcatccccaaagtcagctgtaaag |
157 |
Q |
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| T |
27354581 |
cagcaccgtttactctctcaactaagacttcaaactggttgtcttttgtttcaataaagtggcatagcgggtaatctcatccccaaagtcagctgtaaag |
27354680 |
T |
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| Q |
158 |
aggttagataacctcacaacaccctacagaaagaaaagnnnnnnnnnnnnncacaaataaacatcaaaacattcgtagcaacagtgaa |
245 |
Q |
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||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||| |
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| T |
27354681 |
aggttaggtaacctcacaacaccctacagaaaaaaaa------acataaaacacaaataaacatcaaaacatttgtagcaacagtgaa |
27354762 |
T |
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Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 42995774 - 42995945
Alignment:
| Q |
18 |
aaaaatctctcagagcctttaatcattagaaagnnnnnnncagcaccgtttactctctcaactaagacttcaaactggttgtcttttgtttcaataaagt |
117 |
Q |
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| T |
42995774 |
aaaaatctctcagagccttccatccttagaaagaaaaaaacagcaccgtttactctctcaactaagacttcaaactagttgtcttttgtatcaataaagt |
42995873 |
T |
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| Q |
118 |
ggcataacgggtaatctcatccccaaagtcagctgtaaagaggttagataacctcacaacaccctacagaaa |
189 |
Q |
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| T |
42995874 |
ggcatagcgggaaatctcatccccaaagtcagttgtaaagaggttaggtaacctcacaacaccctacagaaa |
42995945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 42995962 - 42995998
Alignment:
| Q |
209 |
cacaaataaacatcaaaacattcgtagcaacagtgaa |
245 |
Q |
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| T |
42995962 |
cacaaataaacatcaaaacattcgtagcagcagtgaa |
42995998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 185
Target Start/End: Original strand, 21005484 - 21005609
Alignment:
| Q |
61 |
caccgtttactctctcaactaagacttcaaactggttgtcttttgtttcaat-aaagtggcataacgggtaatctcatccccaaagtcagctgtaaagag |
159 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||| || || || |||||| | ||| |||||||||||||||||||| | | ||| || |
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| T |
21005484 |
caccatttactctctcaactaagacttcaaactggttttcttttgtgtctatcaaggtggcaaagcggctaatctcatccccaaagtcaacagaaaatag |
21005583 |
T |
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| Q |
160 |
gttagataacctcacaacaccctaca |
185 |
Q |
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||||| ||||| ||| | ||||||| |
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| T |
21005584 |
gttaggcaacctaacagcgccctaca |
21005609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 183
Target Start/End: Complemental strand, 16981890 - 16981781
Alignment:
| Q |
75 |
tcaactaagacttcaaactggttgtcttttgtttcaat-aaagtggcataacgggtaatctcatccccaaagtcagctgtaaagaggttagataacctca |
173 |
Q |
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||||| |||| |||||||||||| |||||||| ||||| ||||||||||| | ||| |||||||| |||||||||||| ||||||||| | ||| |||| |
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| T |
16981890 |
tcaaccaagatttcaaactggttctcttttgtatcaatcaaagtggcatatcaggtgatctcatctccaaagtcagctccaaagaggtttggtaatctca |
16981791 |
T |
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| Q |
174 |
caacacccta |
183 |
Q |
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|||||||||| |
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| T |
16981790 |
caacacccta |
16981781 |
T |
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