View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15718_low_54 (Length: 257)
Name: NF15718_low_54
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15718_low_54 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 6 - 238
Target Start/End: Original strand, 13652322 - 13652554
Alignment:
| Q |
6 |
aggggttattagcctcattgaatatttcaatgccactagaatttcccctatacatgttttttcactttaccttattgaactcaaaggacgtaccggtgca |
105 |
Q |
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||||||||| | ||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13652322 |
aggggttatcaacctcattcagtctttcaatgccactagaatttcccctatacatgttttttcactttaccttattgaactcaaaggacgtaccggtgca |
13652421 |
T |
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| Q |
106 |
cttgttgctgctcatatggataagcctagtgtgcaacctggagcacaaaaccttaccagttcccaggtagagcaagaaagcattaataatacatttgaag |
205 |
Q |
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| T |
13652422 |
cttgttgctgctcatatggataagcctagtgtgcaacctggagcacaaaatcttaccagttcccaggtagagcaagaaagcattaataatacatttgaag |
13652521 |
T |
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| Q |
206 |
cacttggagaagcgtacgattctgttagagtcc |
238 |
Q |
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| T |
13652522 |
catttggagaggcgtacgatgctgttagagtcc |
13652554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 13659821 - 13660058
Alignment:
| Q |
5 |
caggggttattagcctcattgaatatttcaatgccactagaatttcccctatacatgttttttcactttaccttattgaactcaaaggacgtaccggtgc |
104 |
Q |
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|||||||||| |||||| |||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
13659821 |
caggggttatcagcctcgttgaatctttcaatgctactagaatttcccctatacatgttttcgcactttaccttattgaactcaaaggacgtactggtgc |
13659920 |
T |
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| Q |
105 |
acttgttgctgctcatatggataagcctagtgtgcaacctggagcacaaaaccttaccagttcccaggtagagcaagaaagcattaataatacatttgaa |
204 |
Q |
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| T |
13659921 |
acttgttgccgctcatatggataagcctagtaaccaacctggagcgcaaaatcttacaagatcccaagtagagcaagaaagcattaataatacatttgaa |
13660020 |
T |
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| Q |
205 |
gcacttggagaagcgtacgattctgttagagtccaaac |
242 |
Q |
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| T |
13660021 |
gcacttggagaggcatatgatgctgtcagagtcgaaac |
13660058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 6 - 209
Target Start/End: Original strand, 28608451 - 28608654
Alignment:
| Q |
6 |
aggggttattagcctcattgaatatttcaatgccactagaatttcccctatacatgttttttcactttaccttattgaactcaaaggacgtaccggtgca |
105 |
Q |
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||||||||||||||||||||||| |||||||||||||||| |||||||||| ||| ||||| ||||||||||| |||||||| |||||| |||||| |
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| T |
28608451 |
aggggttattagcctcattgaatctttcaatgccactagactttcccctatgcatatttttgcactttaccttgttgaactcgttggacgtgatggtgca |
28608550 |
T |
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| Q |
106 |
cttgttgctgctcatatggataagcctagtgtgcaacctggagcacaaaaccttaccagttcccaggtagagcaagaaagcattaataatacatttgaag |
205 |
Q |
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||||||||| |||||||||| |||||||||| ||| ||||| ||||||| ||||| || |||||| ||||| |||||| ||| |||||| |||||||| |
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| T |
28608551 |
cttgttgcttctcatatggagaagcctagtggccaatctggaacacaaaatcttacaagatcccagatagagttagaaagtattgataataaatttgaag |
28608650 |
T |
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| Q |
206 |
cact |
209 |
Q |
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|||| |
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| T |
28608651 |
cact |
28608654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 438458 - 438252
Alignment:
| Q |
1 |
gccgcaggggttattagcctcattgaatatttcaatgccactagaatttcccctatacatgttttttcactttaccttattgaactcaaaggacgtaccg |
100 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| || |||||| | |
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| T |
438458 |
gccgtaggagttattagcctcattgaatatttcaatgccactagaatttcccctatacatgtttttggcctttaccttgttgaaatcgttggacgtgttg |
438359 |
T |
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| Q |
101 |
gtgcacttgttgctgctcatatggataagcctagtgtgcaacctggagcacaaaaccttaccagttcccaggtagagcaagaaagcattaataatacatt |
200 |
Q |
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|||| ||||||||| |||||||||| || |||||| ||| ||||| ||||||| ||||| |||||| ||||| ||||||||||| ||||| || |
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| T |
438358 |
gtgcccttgttgcttctcatatggaaaaatctagtggccaatctggaacacaaaatcttacacaatcccagctagagttagaaagcattaccaatacctt |
438259 |
T |
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| Q |
201 |
tgaagca |
207 |
Q |
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||||||| |
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| T |
438258 |
tgaagca |
438252 |
T |
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