View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15718_low_6 (Length: 597)

Name: NF15718_low_6
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15718_low_6
NF15718_low_6
[»] chr7 (7 HSPs)
chr7 (1-377)||(8759387-8759763)
chr7 (440-581)||(8759182-8759324)
chr7 (9-143)||(11797887-11798022)
chr7 (148-340)||(25470614-25470801)
chr7 (153-305)||(23402045-23402198)
chr7 (157-305)||(49002446-49002595)
chr7 (147-207)||(4902641-4902701)
[»] chr3 (27 HSPs)
chr3 (150-377)||(5125370-5125597)
chr3 (147-377)||(54607802-54608026)
chr3 (147-375)||(11019630-11019858)
chr3 (147-375)||(42663989-42664217)
chr3 (440-581)||(54607597-54607739)
chr3 (440-577)||(5125169-5125307)
chr3 (150-341)||(29923035-29923227)
chr3 (150-341)||(29972188-29972380)
chr3 (148-340)||(48154355-48154542)
chr3 (440-558)||(11019446-11019565)
chr3 (147-311)||(36689668-36689829)
chr3 (191-339)||(47871176-47871325)
chr3 (78-143)||(5242530-5242595)
chr3 (459-511)||(47870738-47870790)
chr3 (215-350)||(12121188-12121328)
chr3 (147-305)||(32180418-32180577)
chr3 (145-266)||(31706485-31706606)
chr3 (172-305)||(38392320-38392454)
chr3 (467-518)||(40744311-40744362)
chr3 (312-350)||(43486211-43486249)
chr3 (272-336)||(435201-435264)
chr3 (184-331)||(4556944-4557092)
chr3 (174-237)||(7758129-7758192)
chr3 (149-200)||(23165291-23165342)
chr3 (148-189)||(20373027-20373068)
chr3 (460-513)||(43486145-43486197)
chr3 (184-239)||(45879191-45879249)
[»] chr5 (19 HSPs)
chr5 (151-373)||(26411984-26412207)
chr5 (148-340)||(8762864-8763051)
chr5 (148-340)||(13888300-13888487)
chr5 (151-352)||(12080405-12080593)
chr5 (440-558)||(26411796-26411915)
chr5 (172-350)||(33848039-33848218)
chr5 (450-516)||(12080568-12080634)
chr5 (148-267)||(3014702-3014820)
chr5 (177-350)||(33752405-33752579)
chr5 (167-343)||(10053782-10053953)
chr5 (147-288)||(25654588-25654728)
chr5 (472-537)||(41140292-41140356)
chr5 (148-238)||(21321040-21321130)
chr5 (147-305)||(22616715-22616871)
chr5 (146-239)||(36055541-36055634)
chr5 (460-511)||(33848232-33848283)
chr5 (148-189)||(23954556-23954597)
chr5 (148-189)||(24886467-24886508)
chr5 (322-350)||(41140232-41140260)
[»] scaffold0312 (1 HSPs)
scaffold0312 (144-372)||(8205-8434)
[»] chr1 (13 HSPs)
chr1 (144-372)||(422138-422367)
chr1 (148-361)||(28012868-28013083)
chr1 (269-361)||(7842335-7842427)
chr1 (148-222)||(7843091-7843165)
chr1 (147-305)||(47554977-47555136)
chr1 (143-238)||(5500643-5500738)
chr1 (149-200)||(42663232-42663283)
chr1 (296-346)||(17695267-17695316)
chr1 (148-214)||(26970835-26970901)
chr1 (166-305)||(15964322-15964462)
chr1 (175-239)||(16135612-16135676)
chr1 (149-207)||(10598206-10598264)
chr1 (269-305)||(25943420-25943456)
[»] chr2 (16 HSPs)
chr2 (153-366)||(59334-59548)
chr2 (148-340)||(6357008-6357201)
chr2 (144-375)||(43445217-43445457)
chr2 (148-340)||(7565482-7565671)
chr2 (150-340)||(32652592-32652777)
chr2 (148-299)||(41644101-41644253)
chr2 (147-305)||(19093676-19093835)
chr2 (460-537)||(58724-58803)
chr2 (147-305)||(6177996-6178155)
chr2 (172-305)||(19073574-19073708)
chr2 (277-350)||(27355145-27355218)
chr2 (277-350)||(45411951-45412024)
chr2 (147-306)||(18514399-18514559)
chr2 (173-300)||(34441573-34441701)
chr2 (273-340)||(40912484-40912545)
chr2 (460-536)||(43445543-43445627)
[»] chr4 (16 HSPs)
chr4 (148-340)||(14246379-14246572)
chr4 (1-143)||(8015191-8015334)
chr4 (184-375)||(5813397-5813587)
chr4 (156-377)||(22721927-22722126)
chr4 (148-340)||(5914938-5915125)
chr4 (148-220)||(37795138-37795210)
chr4 (250-350)||(28292430-28292532)
chr4 (176-239)||(17612623-17612686)
chr4 (156-239)||(9743876-9743959)
chr4 (272-334)||(47237449-47237511)
chr4 (148-213)||(47073065-47073130)
chr4 (148-207)||(28292363-28292422)
chr4 (148-189)||(3042999-3043040)
chr4 (148-189)||(4205364-4205405)
chr4 (140-189)||(7703889-7703938)
chr4 (148-189)||(36493479-36493520)
[»] chr8 (12 HSPs)
chr8 (149-341)||(1872582-1872774)
chr8 (147-300)||(4108582-4108736)
chr8 (172-305)||(3038627-3038761)
chr8 (148-206)||(30650903-30650961)
chr8 (172-300)||(23176479-23176608)
chr8 (174-305)||(7290941-7291073)
chr8 (149-200)||(5018555-5018606)
chr8 (152-239)||(18756339-18756426)
chr8 (149-207)||(6446181-6446239)
chr8 (148-189)||(5299716-5299757)
chr8 (148-189)||(37970289-37970330)
chr8 (269-305)||(6267295-6267331)
[»] chr6 (9 HSPs)
chr6 (148-340)||(4487724-4487911)
chr6 (148-336)||(25441684-25441867)
chr6 (293-377)||(18309160-18309243)
chr6 (151-307)||(18306552-18306709)
chr6 (273-375)||(26819709-26819812)
chr6 (148-239)||(11083826-11083917)
chr6 (172-239)||(4104305-4104372)
chr6 (172-239)||(30341505-30341572)
chr6 (191-239)||(34994120-34994168)
[»] scaffold0262 (1 HSPs)
scaffold0262 (250-350)||(11443-11544)
[»] scaffold0003 (1 HSPs)
scaffold0003 (272-350)||(107904-107982)
[»] scaffold0001 (1 HSPs)
scaffold0001 (272-348)||(65949-66025)
[»] scaffold0008 (1 HSPs)
scaffold0008 (150-187)||(267658-267695)


Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 8759763 - 8759387
Alignment:
Q  1 atttttatcctactttttccttcttaatcacatcgtggtgggtcctaattgtgatttattccattaacccttccattagttagttactagccaccattaa 100  Q
    ||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8759763 atttttatcctactttttcattcttactcacatagtggtgggtcctaattgtgatttattccattaaccctttcattagttagttactagccaccattaa 8759664  T
Q  101 ccctttcattttccttcaattagtaacaacccattatacttatggaggcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttattta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8759663 ccctttcattttccttcaattagtaacaacccattatacttatgggggcttctatggtgtagccaagaaaatgacttttttgaaaaagtcattttattta 8759564  T
Q  201 gccaataacataattgttgatgtcatgtcagctagtgtctttgtgaagaaccactataagactaaatatatcttattacaaatcagtcatcttacaaaat 300  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| | |||||| ||||| ||||||||||||| |||||||| ||| |||||||||||    
T  8759563 gccaataacataattgttgatgtcatgtcagctagtgtctttttgatggaccactgtaagattaaatatatcttagtacaaatcggtcctcttacaaaat 8759464  T
Q  301 gttaattacttttgatttattaacttattttatttaaaataaaatcatttttgttcttcatatgttcattttgtttg 377  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8759463 attaattacttttgatttattaacttattttatttaaaataaaatcatttttgttcttcatctgttcattttgtttg 8759387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 440 - 581
Target Start/End: Complemental strand, 8759324 - 8759182
Alignment:
Q  440 gcagaaagagattttatg-taaaattaaatcatttttaatcatcctctttattcttcatctgcagaaggggattttgctagtctaaattatacattttgc 538  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  8759324 gcagaaggagattttatgctaaaattaaatcatttttaatcatcctctttattcttcatctgcagaaggggattttgctaacctaaattatacattttgc 8759225  T
Q  539 taacccggattagggatttacatacttacaccccttgtctgtg 581  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  8759224 taacccggattagggatttacatacttacaccccttgtctgtg 8759182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 11798022 - 11797887
Alignment:
Q  9 cctactttttc-cttcttaatcacatcgtggtgggtcctaattgtgatttattccattaacccttccattagttagttactagccaccattaaccctttc 107  Q
    ||||||||||| || ||||||||||| |||||||| |||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||    
T  11798022 cctactttttcactccttaatcacatagtggtgggccctaattgtgatttattctattaatcctttcattagttagttactagccaccattaaccctttc 11797923  T
Q  108 attttccttcaattagtaacaacccattatacttat 143  Q
    |||||||||||||||||||||| |||||||||||||    
T  11797922 attttccttcaattagtaacaatccattatacttat 11797887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 148 - 340
Target Start/End: Complemental strand, 25470801 - 25470614
Alignment:
Q  148 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaa 247  Q
    |||||||||||| |||||| |||||||||||||| ||||||||||||| |||| |||||| |||| ||||| ||| ||||||||| |||||||||||||     
T  25470801 gcttctatggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtctttgtgat 25470702  T
Q  248 gaaccactataagactaaa-tatatcttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaat 340  Q
    | |||||  ||| |||||| | ||  |||||||||||||||| || |||||||| ||||      |||||||||||||||||||||||||||||    
T  25470701 ggaccaccgtaacactaaattttactttattacaaatcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 25470614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 153 - 305
Target Start/End: Original strand, 23402045 - 23402198
Alignment:
Q  153 tatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaagaacc 252  Q
    ||||||| |||||| ||| |||||||||| ||||||| ||||| |||||||||||  |||| ||  ||||| ||||||||||||||| |  ||  | |||    
T  23402045 tatggtgcagtcaaaaaactgacttttttaaaaaagttattttgtttagccaatagtataactgccgatgttatgtcagctagtgtcatgttgggggacc 23402144  T
Q  253 actataagactaaa-tatatcttattacaaatcagtcatcttacaaaatgttaa 305  Q
    ||| ||| |||||| | |||| |||||||||||||||||| |||||||| ||||    
T  23402145 actctaaaactaaactttatcctattacaaatcagtcatcgtacaaaatattaa 23402198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 157 - 305
Target Start/End: Complemental strand, 49002595 - 49002446
Alignment:
Q  157 gtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaagaaccacta 256  Q
    |||||||||  ||| ||| |||||||||||||| ||||||||||  |||||  |||||||| ||||||||  |||||| |||| |  ||  | ||||||     
T  49002595 gtgtagtcagaaaactgatttttttgaaaaagttattttatttaatcaatagtataattgtcgatgtcatagcagctaatgtcctgctggtggaccactc 49002496  T
Q  257 taagactaaa-tatatcttattacaaatcagtcatcttacaaaatgttaa 305  Q
    ||| |||||| | || || |||||||||||||| || |||||||| ||||    
T  49002495 taaaactaaactttacctcattacaaatcagtcctcatacaaaatattaa 49002446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 4902701 - 4902641
Alignment:
Q  147 ggcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaata 207  Q
    ||||||||||||| |||||  ||| |||||||||||||||||| ||||| ||||| |||||    
T  4902701 ggcttctatggtgaagtcagaaaattgacttttttgaaaaagttattttgtttagtcaata 4902641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 188; Significance: 1e-101; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 150 - 377
Target Start/End: Complemental strand, 5125597 - 5125370
Alignment:
Q  150 ttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaaga 249  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||| |     
T  5125597 ttctatggtgtagtcaagaaaatgacttttttgaaaaagttattttatttaaccaataacataattgttaatgccatgtcagctagtgtctttgtgatgg 5125498  T
Q  250 accactataagactaaatatatcttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaataaaatcatt 349  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5125497 accactgtaagactaaatatatcttattacaaatcagtcctcttacaaaatattaattacttttgatttattaacttattttatttaaaataaaatcatt 5125398  T
Q  350 tttgttcttcatatgttcattttgtttg 377  Q
    |||||||||||| |||||||||||||||    
T  5125397 tttgttcttcatctgttcattttgtttg 5125370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 147 - 377
Target Start/End: Complemental strand, 54608026 - 54607802
Alignment:
Q  147 ggcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtga 246  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||      ||||||||||||    
T  54608026 ggcttctatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgccatgt------gtgtctttgtga 54607933  T
Q  247 agaaccactataagactaaatatatcttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaataaaatc 346  Q
     | |||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  54607932 tggaccactgtaagactaaatatatcttattacaaatcagtcttcttacaaaatattaattacttttgatttattaacttattttatttaaaataaaatc 54607833  T
Q  347 atttttgttcttcatatgttcattttgtttg 377  Q
    ||||||||||||||| |||||||||||||||    
T  54607832 atttttgttcttcatctgttcattttgtttg 54607802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 147 - 375
Target Start/End: Complemental strand, 11019858 - 11019630
Alignment:
Q  147 ggcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtga 246  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||| |||||| |||| |||| |||||||||||||||||    
T  11019858 ggcttctatggtgtagtcaaaaaaatgatttttttgaaaaagtcattttatttagccaatagcatgattgtt-atgtaatgttagctagtgtctttgtga 11019760  T
Q  247 agaaccactataagactaaatat-atcttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaataaaat 345  Q
     | |||||| ||||||||||| | ||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||||| |||||||||||| |    
T  11019759 tggaccactctaagactaaattttatcttattacaaatcagtcctcgtataaaatattaattacttttgatttattaacttatttaatttaaaataaatt 11019660  T
Q  346 catttttgttcttcatatgttcattttgtt 375  Q
    |||||||||||||||| |||||||||||||    
T  11019659 catttttgttcttcatctgttcattttgtt 11019630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 147 - 375
Target Start/End: Original strand, 42663989 - 42664217
Alignment:
Q  147 ggcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtga 246  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||  ||| |||||||||||||||||||||||||||||||||    
T  42663989 ggcttctatggtgtagtcaagaaaatgactttttagaaaaagttattttatttagtcaatagtatagttgttgatgtcatgtcagctagtgtctttgtga 42664088  T
Q  247 agaaccactataagactaaa-tatatcttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaataaaat 345  Q
      ||||||| |||||||||| | ||  |||||||||||||||| || |||||||  ||| |||||||||||||||||||| ||| ||||| |||||||||    
T  42664089 taaaccactgtaagactaaattttactttattacaaatcagtcctcgtacaaaa-attatttacttttgatttattaactgattgtattt-aaataaaat 42664186  T
Q  346 ca-tttttgttcttcatatgttcattttgtt 375  Q
    || |||||||| ||||| |||||||||||||    
T  42664187 cattttttgttattcatttgttcattttgtt 42664217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 440 - 581
Target Start/End: Complemental strand, 54607739 - 54607597
Alignment:
Q  440 gcagaaagagattttatg-taaaattaaatcatttttaatcatcctctttattcttcatctgcagaaggggattttgctagtctaaattatacattttgc 538  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  54607739 gcagaaggagattttatgctaaaattaaatcatttttaatcatcctctttattcttcatctgcagaaggggattttgctaacctaaattatacattttgc 54607640  T
Q  539 taacccggattagggatttacatacttacaccccttgtctgtg 581  Q
    |||||| ||||||||||||||||||||||||||||||| ||||    
T  54607639 taacccagattagggatttacatacttacaccccttgtttgtg 54607597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 440 - 577
Target Start/End: Complemental strand, 5125307 - 5125169
Alignment:
Q  440 gcagaaagagattttatg-taaaattaaatcatttttaatcatcctctttattcttcatctgcagaaggggattttgctagtctaaattatacattttgc 538  Q
    |||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||    
T  5125307 gcagaaggagattttatgctaaaattaaatcatttttattcatcctctttattcttcatctggagaaggggattttgctaacctaaattatacattttgc 5125208  T
Q  539 taacccggattagggatttacatacttacaccccttgtc 577  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  5125207 taacccggattagggatttacatacttacatcccttgtc 5125169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 150 - 341
Target Start/End: Original strand, 29923035 - 29923227
Alignment:
Q  150 ttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaaga 249  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||  ||| || |||||| ||||||||||   |||||||||| |     
T  29923035 ttctatggtgtagtcaagaaaatgactttttttaaaaagtcattttatttaactaatagtatagttcttgatgccatgtcagctgacgtctttgtgatgg 29923134  T
Q  250 accactataagactaaa-tatatcttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaata 341  Q
    |||||||||| |||||| | ||  ||||||||||| |||  |  |||||||| ||||| || |||||||||||||||||||||||||||||||    
T  29923135 accactataaaactaaattttactttattacaaataagttcttgtacaaaatattaataacctttgatttattaacttattttatttaaaata 29923227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 150 - 341
Target Start/End: Original strand, 29972188 - 29972380
Alignment:
Q  150 ttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaaga 249  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||  ||| || |||||| ||||||||||   |||||||||| |     
T  29972188 ttctatggtgtagtcaagaaaatgactttttttaaaaagtcattttatttaactaatagtatagttcttgatgccatgtcagctgacgtctttgtgatgg 29972287  T
Q  250 accactataagactaaa-tatatcttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaata 341  Q
    |||||||||| |||||| | ||  ||||||||||| |||  |  |||||||| ||||| || |||||||||||||||||||||||||||||||    
T  29972288 accactataaaactaaattttactttattacaaataagttcttgtacaaaatattaataacctttgatttattaacttattttatttaaaata 29972380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 148 - 340
Target Start/End: Original strand, 48154355 - 48154542
Alignment:
Q  148 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaa 247  Q
    |||||||||||| ||| || |||||||||||||| ||||| ||||||| |||| |||||| |||| ||||| ||| |||||||||||||||||||||||     
T  48154355 gcttctatggtgcagttaaaaaaatgacttttttaaaaaaatcattttgtttaaccaatagcatagttgttcatgccatgtcagctagtgtctttgtgat 48154454  T
Q  248 gaaccactataagactaaa-tatatcttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaat 340  Q
    | |||||| ||| |||||| | ||  |||||||||||||||| || |||||||  ||||      |||||||||||||||||||||||||||||    
T  48154455 ggaccactgtaacactaaattttactttattacaaatcagtcctcatacaaaacattaa------ttgatttattaacttattttatttaaaat 48154542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 440 - 558
Target Start/End: Complemental strand, 11019565 - 11019446
Alignment:
Q  440 gcagaaagagattttatg-taaaattaaatcatttttaatcatcctctttattcttcatctgcagaaggggattttgctagtctaaattatacattttgc 538  Q
    |||||| ||||||||||| | ||||||||||||||||||||||||||||| |||||||| ||   |||||||||||||||  ||||||||||||||||||    
T  11019565 gcagaaggagattttatgctcaaattaaatcatttttaatcatcctctttcttcttcatttgtgtaaggggattttgctaacctaaattatacattttgc 11019466  T
Q  539 taacccggattagggattta 558  Q
    ||||||   |||||||||||    
T  11019465 taacccaagttagggattta 11019446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 147 - 311
Target Start/End: Complemental strand, 36689829 - 36689668
Alignment:
Q  147 ggcttctatggtgtagtcaagaaaatgactttttt-gaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtg 245  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||| |     ||||||||||| ||||||||||||||||||||||||||||  ||    
T  36689829 ggcttctatggtgttgtcaagaaaatgactttttttgaaaaagtcatttaa-----ccaataacatagttgttgatgtcatgtcagctagtgtcttgttg 36689735  T
Q  246 aagaaccactataagactaaa-tatatcttattacaaatcagtcatcttacaaaatgttaattactt 311  Q
    | | |||||  ||| |||||| | ||  ||||||||||| |||| || |||||||| ||||||||||    
T  36689734 atggaccaccgtaaaactaaactttactttattacaaataagtcctcatacaaaatattaattactt 36689668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 191 - 339
Target Start/End: Complemental strand, 47871325 - 47871176
Alignment:
Q  191 attttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaagaaccactataagactaaa-tatatcttattacaaatcagtca 289  Q
    |||||||||||||||||| |||| |||||||||||||||| |||||||| |  ||  | | |||| ||||| |||| | ||   | |||||||||||||     
T  47871325 attttatttagccaataatataactgttgatgtcatgtcaactagtgtcctgctgccggatcactctaagattaaactttacaatgttacaaatcagtcc 47871226  T
Q  290 tcttacaaaatgttaattacttttgatttattaacttattttatttaaaa 339  Q
    || || ||||| ||||||||||||||||||||||||||||||||||||||    
T  47871225 tcatataaaatattaattacttttgatttattaacttattttatttaaaa 47871176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 5242595 - 5242530
Alignment:
Q  78 agttagttactagccaccattaaccctttcattttccttcaattagtaacaacccattatacttat 143  Q
    ||||||||||||||||||| ||||||||| ||||||| |||||||||||||| |||||||||||||    
T  5242595 agttagttactagccaccaataacccttttattttccctcaattagtaacaatccattatacttat 5242530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 459 - 511
Target Start/End: Complemental strand, 47870790 - 47870738
Alignment:
Q  459 aaaattaaatcatttttaatcatcctctttattcttcatctgcagaaggggat 511  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  47870790 aaaattaaatcatttttaattatcctctttcttcttcatctgcagaaggggat 47870738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 215 - 350
Target Start/End: Original strand, 12121188 - 12121328
Alignment:
Q  215 tgttgatgtcatgtcagctagtgtctttgtgaagaaccactataagactaaa-tatatcttattacaaatcagtcatcttacaaaatgttaattactttt 313  Q
    |||||||| ||||||||||| |||  |  ||  ||||||||||||||||||| | || |||||||||||| | || |  |||||||| ||||||||||||    
T  12121188 tgttgatgccatgtcagctaatgttctgatggtgaaccactataagactaaactttaccttattacaaataactccttatacaaaatattaattactttt 12121287  T
Q  314 gattt----attaacttattttatttaaaataaaatcattt 350  Q
    |||||    ||||||||||| |||||||||| |||||||||    
T  12121288 gatttatttattaacttattatatttaaaattaaatcattt 12121328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 147 - 305
Target Start/End: Original strand, 32180418 - 32180577
Alignment:
Q  147 ggcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtga 246  Q
    |||||||| | ||||||||  ||| |||||| |||| |||||| ||||| |||||||||||  |||| || |||||||||||| ||||||||| |  ||     
T  32180418 ggcttctacgatgtagtcagaaaattgacttctttggaaaagttattttgtttagccaatagtataactgctgatgtcatgtcggctagtgtcctgctgg 32180517  T
Q  247 agaaccactataagactaaa-tatatcttattacaaatcagtcatcttacaaaatgttaa 305  Q
     | |||||| ||| |||||| | || ||||||||||||||||| || |||||||| ||||    
T  32180518 tggaccactctaaaactaaactttaccttattacaaatcagtcctcatacaaaatattaa 32180577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 145 - 266
Target Start/End: Original strand, 31706485 - 31706606
Alignment:
Q  145 gaggcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgt 244  Q
    |||||||| | |||| |||||| ||| |||||||||||||||||| ||||| ||||  |||||  |||||| |||||||||||| | |||||||| |  |    
T  31706485 gaggcttcaacggtgcagtcaaaaaactgacttttttgaaaaagttattttgtttaatcaatagtataatttttgatgtcatgttaactagtgtcctgtt 31706584  T
Q  245 gaagaaccactataagactaaa 266  Q
    || | |||||| ||||||||||    
T  31706585 gatggaccactctaagactaaa 31706606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 172 - 305
Target Start/End: Original strand, 38392320 - 38392454
Alignment:
Q  172 tgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaagaaccactataagactaaa-tata 270  Q
    ||||||||||  |||||| ||||| |||||||||||| |||| || |||| |||| |||||||||||| |  ||  |||||  | ||| |||||| | ||    
T  38392320 tgacttttttagaaaagttattttgtttagccaataatataactgctgatatcatatcagctagtgtcatgttggtgaaccgttctaaaactaaatttta 38392419  T
Q  271 tcttattacaaatcagtcatcttacaaaatgttaa 305  Q
      |||||||||||||||||||||||||||| ||||    
T  38392420 cattattacaaatcagtcatcttacaaaatattaa 38392454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 467 - 518
Target Start/End: Original strand, 40744311 - 40744362
Alignment:
Q  467 atcatttttaatcatcctctttattcttcatctgcagaaggggattttgcta 518  Q
    |||||||||||||||||||||| ||||||||||  | |||||||||||||||    
T  40744311 atcatttttaatcatcctctttcttcttcatctttataaggggattttgcta 40744362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 43486249 - 43486211
Alignment:
Q  312 ttgatttattaacttattttatttaaaataaaatcattt 350  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  43486249 ttgatttattaacttattttatttaaaattaaatcattt 43486211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 336
Target Start/End: Complemental strand, 435264 - 435201
Alignment:
Q  272 cttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttattta 336  Q
    |||||||||||| |||| || || ||||  ||||||||||| |||||||||||||||||||||||    
T  435264 cttattacaaattagtcctcgtagaaaactttaattacttt-gatttattaacttattttattta 435201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 331
Target Start/End: Complemental strand, 4557092 - 4556944
Alignment:
Q  184 aaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaagaaccactataagactaaatatatc-ttattacaaa 282  Q
    |||||| ||||| ||| ||| |||  |||||||||||||||||||||| |||| |  |  ||| | |||| | |||| |||||  | || ||||||||||    
T  4557092 aaaagttattttgttttgcctataggataattgttgatgtcatgtcagttagtatactgttgatggaccattgtaagtctaaacttttccttattacaaa 4556993  T
Q  283 tcagtcatcttacaaaatgttaattacttttgatttattaacttatttt 331  Q
    |||||| |  || ||||   |||||||||||||||||||||||||||||    
T  4556992 tcagtccttataaaaaacaataattacttttgatttattaacttatttt 4556944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 237
Target Start/End: Original strand, 7758129 - 7758192
Alignment:
Q  174 acttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtg 237  Q
    |||||||||||||||| ||||| ||||| |||||  |||||||  ||| |||||||||||||||    
T  7758129 acttttttgaaaaagttattttgtttagtcaatagtataattgccgatatcatgtcagctagtg 7758192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 23165291 - 23165342
Alignment:
Q  149 cttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttattta 200  Q
    |||||| |||| ||||| |||| |||||||||||||||||| ||||||||||    
T  23165291 cttctacggtgcagtcatgaaattgacttttttgaaaaagttattttattta 23165342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 20373027 - 20373068
Alignment:
Q  148 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagt 189  Q
    |||||||||||| ||||| |||| ||||||||||||||||||    
T  20373027 gcttctatggtgcagtcaggaaactgacttttttgaaaaagt 20373068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 513
Target Start/End: Complemental strand, 43486197 - 43486145
Alignment:
Q  460 aaattaaatcatttttaatcatcctctttattcttcatctgcagaaggggattt 513  Q
    |||||||||| ||||||| |||||| ||| ||||||||||||| ||||||||||    
T  43486197 aaattaaatcgtttttaaccatcctttttcttcttcatctgca-aaggggattt 43486145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 45879191 - 45879249
Alignment:
Q  184 aaaagtcattttatttagccaata---acataattgttgatgtcatgtcagctagtgtc 239  Q
    |||||| ||||| |||||||||||   | ||||||| ||||||||||||||||||||||    
T  45879191 aaaagttattttgtttagccaatagtaatataattgctgatgtcatgtcagctagtgtc 45879249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 152; Significance: 3e-80; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 151 - 373
Target Start/End: Complemental strand, 26412207 - 26411984
Alignment:
Q  151 tctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaagaa 250  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| | ||||||||| | |    
T  26412207 tctatggtgtagtcaagaaaatgacttatttgaaaaagtcattttatttagccaatagcatgattgttgatgtcatgtcagctaatatctttgtgatgga 26412108  T
Q  251 ccactataagactaaa-tatatcttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaataaaatcatt 349  Q
    ||| | |||||||||| ||||||||||| |||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  26412107 ccattgtaagactaaattatatcttattgcaaatcagtcctcgtataaaatattaattacttttgatttattaacttattttatttaaaataaattcatt 26412008  T
Q  350 tttgttcttcatatgttcattttg 373  Q
    |||||||||||| |||||||||||    
T  26412007 tttgttcttcatctgttcattttg 26411984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 148 - 340
Target Start/End: Original strand, 8762864 - 8763051
Alignment:
Q  148 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaa 247  Q
    |||||||||||| |||||| |||||||||||||| ||||||||||||| |||| |||||| |||| ||||| ||| ||||||||| |||||||||||||     
T  8762864 gcttctatggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtctttgtgat 8762963  T
Q  248 gaaccactataagactaaa-tatatcttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaat 340  Q
    | |||||  ||| |||||| | ||  |||||||||||||||| || |||||||| ||||      |||||||||||||||||||||||||||||    
T  8762964 ggaccaccgtaacactaaattttactttattacaaatcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 8763051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 148 - 340
Target Start/End: Complemental strand, 13888487 - 13888300
Alignment:
Q  148 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaa 247  Q
    |||||||||||||||| || |||||||||||||| |||||||||||||||||| |||||  |||| ||||| ||| |||||||||||||||||||||||     
T  13888487 gcttctatggtgtagtaaaaaaaatgacttttttaaaaaagtcattttatttaaccaattgcatagttgtttatgccatgtcagctagtgtctttgtgat 13888388  T
Q  248 gaaccactataagactaaa-tatatcttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaat 340  Q
    | ||| || ||| |||||| | ||  |||||| ||||||||| || |||||||| ||||      |||||||||||||||||||||||||||||    
T  13888387 ggacccctgtaacactaaattttactttattataaatcagtcctcatacaaaatattaa------ttgatttattaacttattttatttaaaat 13888300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 151 - 352
Target Start/End: Original strand, 12080405 - 12080593
Alignment:
Q  151 tctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaagaa 250  Q
    ||||||||||||||| |||| |||||||||||||||||| ||||| ||||| | ||||||||||||||||||||||||||||||||||| |  ||  | |    
T  12080405 tctatggtgtagtcaggaaattgacttttttgaaaaagttattttgtttagtcgataacataattgttgatgtcatgtcagctagtgtcctgctggtgga 12080504  T
Q  251 ccactataagactaaa-tatatcttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaataaaatcatt 349  Q
    ||||| |||||||||| | || ||||||||||||||||| || ||||||||              |||||||||||||||||||||||||| ||||||||    
T  12080505 ccactttaagactaaactttaccttattacaaatcagtcctcatacaaaat--------------atttattaacttattttatttaaaattaaatcatt 12080590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 440 - 558
Target Start/End: Complemental strand, 26411915 - 26411796
Alignment:
Q  440 gcagaaagagattttatg-taaaattaaatcatttttaatcatcctctttattcttcatctgcagaaggggattttgctagtctaaattatacattttgc 538  Q
    |||||| | ||||||||| | |||||||||||||||||||||| |||||| ||| |||||||  ||||||||||||||||  ||||||||||||||||||    
T  26411915 gcagaaggcgattttatgctcaaattaaatcatttttaatcattctctttcttcctcatctgtggaaggggattttgctaacctaaattatacattttgc 26411816  T
Q  539 taacccggattagggattta 558  Q
    ||||||  ||||||||||||    
T  26411815 taacccaaattagggattta 26411796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 172 - 350
Target Start/End: Original strand, 33848039 - 33848218
Alignment:
Q  172 tgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaagaaccactataagactaaa-tata 270  Q
    ||||| |||||||||||| | ||| ||||  |||||| ||||||||| ||| ||||| |||||||||| |  |||   || ||| |||||||||| | ||    
T  33848039 tgactattttgaaaaagttactttgtttaatcaataatataattgttaatgacatgtaagctagtgtcatgctgatagactactctaagactaaacttta 33848138  T
Q  271 tcttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaataaaatcattt 350  Q
     ||||||| |||||| || || |||||||| ||||||| ||||||||||||||||| ||||||||||||| |||||||||    
T  33848139 ccttattaaaaatcaatcctcatacaaaatattaattatttttgatttattaacttgttttatttaaaattaaatcattt 33848218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 450 - 516
Target Start/End: Original strand, 12080568 - 12080634
Alignment:
Q  450 attttatgtaaaattaaatcatttttaatcatcctctttattcttcatctgcagaaggggattttgc 516  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  12080568 attttatttaaaattaaatcatttttaatcatcctctttcttcttcatctgcaaaaggggattttgc 12080634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 148 - 267
Target Start/End: Complemental strand, 3014820 - 3014702
Alignment:
Q  148 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaa 247  Q
    |||| ||||||| |||||| ||||||| |||||| ||||||||||||| |||| |||||| |||| ||||| ||| |||||||| ||||||||||||||     
T  3014820 gcttttatggtgcagtcaacaaaatgattttttt-aaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagttagtgtctttgtgat 3014722  T
Q  248 gaaccactataagactaaat 267  Q
    | |||||| ||| |||||||    
T  3014721 ggaccactgtaacactaaat 3014702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 177 - 350
Target Start/End: Original strand, 33752405 - 33752579
Alignment:
Q  177 tttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaagaaccactataagactaaa-tatatctta 275  Q
    |||| |||||||| | ||| ||||| |||||| ||||||||| ||| ||||| ||||| |||| |  ||    || ||| |||||||||| | || ||||    
T  33752405 ttttagaaaaagttactttgtttagtcaataatataattgttaatgacatgtgagctactgtcatgttggtagactactctaagactaaactttacctta 33752504  T
Q  276 ttacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaataaaatcattt 350  Q
    ||| |||||| || || |||||||| ||||||| ||||||||||||||||| ||||||||||||| |||||||||    
T  33752505 ttaaaaatcaatcctcatacaaaatattaattatttttgatttattaacttgttttatttaaaattaaatcattt 33752579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 167 - 343
Target Start/End: Complemental strand, 10053953 - 10053782
Alignment:
Q  167 gaaaatgacttttttgaaaaagtcat-tttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaagaaccactataagactaa 265  Q
    |||| |||||||||||||||||| || ||| |||| ||||||  |||| ||||||||||||||||||||||||         | |||||| || ||||||    
T  10053953 gaaattgacttttttgaaaaagttatgtttgtttacccaatagtataactgttgatgtcatgtcagctagtgt---------ggaccactctacgactaa 10053863  T
Q  266 atatatctt-attacaaa--tcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaataaa 343  Q
    || |  ||| ||||||||  |||||| || |||||||| ||||||||| ||||||||||||||||||||||||||| ||||    
T  10053862 attttactttattacaaaaatcagtcctcatacaaaatattaattactcttgatttattaacttattttatttaaattaaa 10053782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 147 - 288
Target Start/End: Complemental strand, 25654728 - 25654588
Alignment:
Q  147 ggcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtga 246  Q
    |||||||||||||  ||||| ||| ||||||||||  |||||| ||||| |||| ||||||  |||||||||||||| |||||| ||||||| ||  |||    
T  25654728 ggcttctatggtgctgtcaataaa-tgacttttttagaaaagttattttgtttaaccaatagtataattgttgatgt-atgtcaactagtgtattattga 25654631  T
Q  247 agaaccactataagactaaa-tatatcttattacaaatcagtc 288  Q
     | |||||| ||| |||||| | || |||||||||||||||||    
T  25654630 tggaccactctaaaactaaactttaccttattacaaatcagtc 25654588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 472 - 537
Target Start/End: Original strand, 41140292 - 41140356
Alignment:
Q  472 ttttaatcatcctctttattcttcatctgcagaaggggattttgctagtctaaattatacattttg 537  Q
    |||||||| |||||||| |||||||| ||||||||||||||||||||  ||||||||| |||||||    
T  41140292 ttttaatcctcctctttcttcttcat-tgcagaaggggattttgctaacctaaattattcattttg 41140356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 238
Target Start/End: Complemental strand, 21321130 - 21321040
Alignment:
Q  148 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgt 238  Q
    |||||||||||| || ||  ||| |||||||||||||||||| ||||| |||||||||||  |||| ||  ||| ||||| ||||||||||    
T  21321130 gcttctatggtgcagccagaaaactgacttttttgaaaaagttattttgtttagccaatagtataactgacgatttcatgccagctagtgt 21321040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 147 - 305
Target Start/End: Complemental strand, 22616871 - 22616715
Alignment:
Q  147 ggcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtga 246  Q
    ||||||||||||| |||||  ||| ||| ||||||| |||||| ||||| |||||||||||  ||||    ||  |||||||||||||||||| |  ||     
T  22616871 ggcttctatggtgcagtcagaaaactgatttttttggaaaagttattttgtttagccaatagtataa---ctgcagtcatgtcagctagtgtcctgctgg 22616775  T
Q  247 agaaccactataagactaaa-tatatcttattacaaatcagtcatcttacaaaatgttaa 305  Q
     | |||||| ||| |||||| | || ||||||||||||||||| || |||||||| ||||    
T  22616774 tggaccactctaaaactaaactttaccttattacaaatcagtcctcatacaaaatattaa 22616715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 146 - 239
Target Start/End: Original strand, 36055541 - 36055634
Alignment:
Q  146 aggcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtc 239  Q
    ||||||||| ||||||||||| ||| | ||||||||| |||||| ||||| |||||| ||||  |||| ||  ||||||| |||| ||||||||    
T  36055541 aggcttctaaggtgtagtcaaaaaactaacttttttggaaaagttattttgtttagctaatagtataactggcgatgtcaagtcaactagtgtc 36055634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 511
Target Start/End: Original strand, 33848232 - 33848283
Alignment:
Q  460 aaattaaatcatttttaatcatcctctttattcttcatctgcagaaggggat 511  Q
    ||||||||||||||||| |||||| |||| |||||||||| || ||||||||    
T  33848232 aaattaaatcatttttactcatccgctttcttcttcatctacataaggggat 33848283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 23954556 - 23954597
Alignment:
Q  148 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagt 189  Q
    |||||||||||| ||||| |||| ||||||||||||||||||    
T  23954556 gcttctatggtgcagtcaggaaactgacttttttgaaaaagt 23954597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 24886508 - 24886467
Alignment:
Q  148 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagt 189  Q
    |||| ||||||| |||||||||| ||||||||||||||||||    
T  24886508 gcttttatggtgcagtcaagaaactgacttttttgaaaaagt 24886467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 322 - 350
Target Start/End: Original strand, 41140232 - 41140260
Alignment:
Q  322 aacttattttatttaaaataaaatcattt 350  Q
    |||||||||||||||||||||||||||||    
T  41140232 aacttattttatttaaaataaaatcattt 41140260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 144 - 372
Target Start/End: Original strand, 8205 - 8434
Alignment:
Q  144 ggaggcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttg 243  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| |||||||||||| ||||||      
T  8205 ggaggcttctatggtgttgtcaagaaaatgacttttttgaaaaagtcattttatttaaccaataacatagtagttgatatcatgtcagctaatgtcttgt 8304  T
Q  244 tgaagaaccactataagactaaa-tatatcttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaataa 342  Q
    ||| | |||||| || ||||||| | ||  ||||||||| | |||| || |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8305 tgatggaccactctacgactaaactttactttattacaacttagtcctcatacaaaatattaattacttttgatttattaacttattttatttaaaataa 8404  T
Q  343 aatcatttttgttcttcatatgttcatttt 372  Q
    ||||||||||||||| ||| ||||||||||    
T  8405 aatcatttttgttctacatctgttcatttt 8434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 2e-69; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 144 - 372
Target Start/End: Complemental strand, 422367 - 422138
Alignment:
Q  144 ggaggcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttg 243  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| |||||||||||| ||||||      
T  422367 ggaggcttctatggtgttgtcaagaaaatgacttttttgaaaaagtcattttatttaaccaataacatagtagttgatatcatgtcagctaatgtcttgt 422268  T
Q  244 tgaagaaccactataagactaaa-tatatcttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaataa 342  Q
    ||| | |||||| || ||||||| | ||  ||||||||| | |||| || |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  422267 tgatggaccactctacgactaaactttactttattacaacttagtcctcatacaaaatattaattacttttgatttattaacttattttatttaaaataa 422168  T
Q  343 aatcatttttgttcttcatatgttcatttt 372  Q
    ||||||||||||||| ||| ||||||||||    
T  422167 aatcatttttgttctacatctgttcatttt 422138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 148 - 361
Target Start/End: Complemental strand, 28013083 - 28012868
Alignment:
Q  148 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaa 247  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||  |||||||||| |||||||||||||||||||||||||||||||||  |||     
T  28013083 gcttctatggtgtagtcaagaaaatgtcttttttgaaaaagttattttggttagccaatagcataattgttgatgtcatgtcagctagtgtcttgctgat 28012984  T
Q  248 gaaccactataagactaaa-tatatcttattacaaatcagtcatcttacaaaatgttaattac-ttttgatttattaacttattttatttaaaataaaat 345  Q
      ||||    |||| |||| | || ||||||||||||||||| || || ||| | |||||||| ||||||||||||||||||||||||||||||||||||    
T  28012983 agaccatcgcaagagtaaactttaccttattacaaatcagtcctcgtaaaaactattaattactttttgatttattaacttattttatttaaaataaaat 28012884  T
Q  346 catttttgttcttcat 361  Q
    ||||||||||||||||    
T  28012883 catttttgttcttcat 28012868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 269 - 361
Target Start/End: Complemental strand, 7842427 - 7842335
Alignment:
Q  269 tatcttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaataaaatcatttttgttcttcat 361  Q
    ||||||||||||||||| || || || ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7842427 tatcttattacaaatcaatcctcgtaaaaaatatttattacttttgatttattaacttattttatttaaaataaaatcatttttgttcttcat 7842335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 148 - 222
Target Start/End: Complemental strand, 7843165 - 7843091
Alignment:
Q  148 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatg 222  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||  || ||||||| ||||||||||||||    
T  7843165 gcttctatggtgtagtcaagaaaatgactttttttaaaaagttattttggttggccaatagcataattgttgatg 7843091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 147 - 305
Target Start/End: Complemental strand, 47555136 - 47554977
Alignment:
Q  147 ggcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgt-g 245  Q
    |||||||| |||| ||| | |||| |||||||||||||||||| ||||| |||| ||||||  |||| |||||| | ||||||| |||||||| |  | |    
T  47555136 ggcttctacggtgcagttaggaaactgacttttttgaaaaagttattttgtttaaccaatagtataactgttgaggccatgtcaactagtgtcctgctag 47555037  T
Q  246 aagaaccactataagactaaa-tatatcttattacaaatcagtcatcttacaaaatgttaa 305  Q
     || |||||| ||||| |||| | || |||||||||||||||||||| |||||||| ||||    
T  47555036 tag-accactctaagagtaaactttaccttattacaaatcagtcatcatacaaaatattaa 47554977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 5500738 - 5500643
Alignment:
Q  143 tggaggcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgt 238  Q
    |||||||||||| |||| ||| || ||| | |||||||||||||||| ||||| |||||| ||||  |||| | | ||||||||||||||||||||    
T  5500738 tggaggcttctacggtgcagttaaaaaactaacttttttgaaaaagttattttgtttagctaatagtataactatcgatgtcatgtcagctagtgt 5500643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 42663232 - 42663283
Alignment:
Q  149 cttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttattta 200  Q
    ||||||||||| ||||| |||| |||||||||||||||||| ||||||||||    
T  42663232 cttctatggtgcagtcacgaaattgacttttttgaaaaagttattttattta 42663283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 17695267 - 17695316
Alignment:
Q  296 aaaatgttaattacttttgatttattaacttattttatttaaaataaaatc 346  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||| |||||    
T  17695267 aaaatattaatta-ttttgatttattaacttattttatttaaaattaaatc 17695316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 26970901 - 26970835
Alignment:
Q  148 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataat 214  Q
    |||| |||||||||||||  ||| |||||||||||||||||| |||||||||  |||||| ||||||    
T  26970901 gcttttatggtgtagtcagtaaactgacttttttgaaaaagttattttattttaccaatagcataat 26970835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 305
Target Start/End: Complemental strand, 15964462 - 15964322
Alignment:
Q  166 agaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaagaaccactataagactaa 265  Q
    ||||||| | ||||||  |||| | ||||| |||||||||||  |||| ||| ||||||||||||||||||||| |  | | | |||||| ||| |||||    
T  15964462 agaaaattatttttttagaaaaattattttgtttagccaatagtataactgtcgatgtcatgtcagctagtgtcctactaatgtaccactctaaaactaa 15964363  T
Q  266 a-tatatcttattacaaatcagtcatcttacaaaatgttaa 305  Q
    | | || ||||||||||||||||| || || ||||| ||||    
T  15964362 attttaccttattacaaatcagtcctcatataaaatattaa 15964322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 16135676 - 16135612
Alignment:
Q  175 cttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtc 239  Q
    ||||||||||||||| ||||| |||||| ||||  |||| ||| |||||||||||| ||||||||    
T  16135676 cttttttgaaaaagttattttgtttagctaatagtataactgtcgatgtcatgtcaactagtgtc 16135612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 10598264 - 10598206
Alignment:
Q  149 cttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaata 207  Q
    |||||| |||| |||||||||| ||||||||||||||||||  |||| |||| ||||||    
T  10598264 cttctacggtgcagtcaagaaactgacttttttgaaaaagttgttttgtttaaccaata 10598206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 305
Target Start/End: Complemental strand, 25943456 - 25943420
Alignment:
Q  269 tatcttattacaaatcagtcatcttacaaaatgttaa 305  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  25943456 tatcttattacaaatcagtcatcgtacaaaatattaa 25943420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 2e-60; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 153 - 366
Target Start/End: Complemental strand, 59548 - 59334
Alignment:
Q  153 tatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaagaacc 252  Q
    ||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||  ||||||| |||||| ||||||||||| || |||  ||| | |||    
T  59548 tatggtgtagttaagcaaatgacttttttgaaaaagttattttatttagccaattgcataattattgatgccatgtcagctaatggcttcttgatggacc 59449  T
Q  253 actataagactaaatat-atcttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaataaaatcatttt 351  Q
    |   ||||||||||| | ||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  59448 aacgtaagactaaattttatcttattataaatcagtcatcgtacaaaatattaattacttttgatttattaacttattttatttaaaataaaatcaattt 59349  T
Q  352 tgttcttcatatgtt 366  Q
    |||||||||| ||||    
T  59348 tgttcttcatctgtt 59334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 148 - 340
Target Start/End: Complemental strand, 6357201 - 6357008
Alignment:
Q  148 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaa 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| || ||| ||||||||||  |||||||||||     
T  6357201 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcatttaatttagccaatagcataattcttaatgccatgtcagctgatgtctttgtgat 6357102  T
Q  248 gaaccactataagactaaa-tatatcttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaat 340  Q
    | ||||||||||||||||| | ||  |||||| |||| |||| |   ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  6357101 ggaccactataagactaaattttactttattataaataagtccttgaacaaaatattaattacttttgatttataaacttattttatttaaaat 6357008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 144 - 375
Target Start/End: Original strand, 43445217 - 43445457
Alignment:
Q  144 ggaggcttctatggtgtagtcaagaaaatgacttttttgaaaaa-gtcattttatttagccaataacataattgttga-------tgtcatgtcagctag 235  Q
    |||| |||||||||||||||||||||||| | |||||| ||||| ||||||||||||||||||||  ||| ||||| |       || |||||||  ||     
T  43445217 ggagccttctatggtgtagtcaagaaaataatttttttaaaaaaagtcattttatttagccaatagaatagttgttaacttgttatgccatgtcaattaa 43445316  T
Q  236 tgtctttgtgaagaaccactataagactaaatatatctt-attacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatt 334  Q
    ||| |||  || | |||||  ||||||||||| |  ||| ||||||||| |||| |  |||||||| |||||||||||||||||||||||||||||||||    
T  43445317 tgtttttcggatggaccaccgtaagactaaattttactttattacaaattagtccttatacaaaatattaattacttttgatttattaacttattttatt 43445416  T
Q  335 taaaataaaatcatttttgttcttcatatgttcattttgtt 375  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  43445417 taaaataaaatcatttttgttcttcatctgttcattttgtt 43445457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 148 - 340
Target Start/End: Complemental strand, 7565671 - 7565482
Alignment:
Q  148 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaa 247  Q
    ||||||| |||| |||||| |||||||||||||| ||||||||||||| |||| |||||| |||| ||||| ||| |||||||||||||||||||||||     
T  7565671 gcttctacggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagctagtgtctttgtgat 7565572  T
Q  248 gaaccactataagactaaa---tatatcttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaat 340  Q
    | |||||| ||| ||||||   ||| | |||||||||||||||| || |||||||| ||||      |||||||||||||||||||||||||||||    
T  7565571 ggaccactgtaacactaaattttattttttattacaaatcagtcctcatacaaaatattaa------ttgatttattaacttattttatttaaaat 7565482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 150 - 340
Target Start/End: Complemental strand, 32652777 - 32652592
Alignment:
Q  150 ttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaaga 249  Q
    |||||||||| |||||| ||||| |||||||| ||||||||||||| |||| |||||| |||| ||||| ||| |||||||||||||||||||||||       
T  32652777 ttctatggtgcagtcaaaaaaataacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagctagtgtctttgtgatag 32652678  T
Q  250 accactataagactaaa-tatatcttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaat 340  Q
    |||||||| | | |||| | ||  |||||||||||||||| || |||||||| ||||      |||||||||||||||||||||||||||||    
T  32652677 accactatgacattaaattttactttattacaaatcagtcctcatacaaaatattaa------ttgatttattaacttattttatttaaaat 32652592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 148 - 299
Target Start/End: Complemental strand, 41644253 - 41644101
Alignment:
Q  148 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaa 247  Q
    ||||||| |||| ||| || ||| | ||||||||||||||   ||||| |||||||||||| |||||||||||||||||||||||||||||| |  ||      
T  41644253 gcttctacggtgcagtaaaaaaacttacttttttgaaaaatatattttgtttagccaataatataattgttgatgtcatgtcagctagtgtcatgctggt 41644154  T
Q  248 gaaccactataagactaaa-tatatcttattacaaatcagtcatcttacaaaa 299  Q
    | |||||| ||| |||||| | || ||||||||||||||||| || |||||||    
T  41644153 ggaccactctaaaactaaactctaccttattacaaatcagtcctcatacaaaa 41644101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 147 - 305
Target Start/End: Complemental strand, 19093835 - 19093676
Alignment:
Q  147 ggcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtga 246  Q
    |||||||| |||| |||||| ||| |||||||||| ||||||| | ||| ||||  |||||  |||||||||||||| || ||| ||||||||||  ||     
T  19093835 ggcttctacggtgcagtcaaaaaattgacttttttaaaaaagttaatttgtttaatcaatagtataattgttgatgttatctcaactagtgtcttgttgg 19093736  T
Q  247 agaaccactataagactaaa-tatatcttattacaaatcagtcatcttacaaaatgttaa 305  Q
    || |||||| ||| |||||| | || ||||||||||||||||| ||||||||||| ||||    
T  19093735 aggaccactctaaaactaaactttaccttattacaaatcagtcctcttacaaaatattaa 19093676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 460 - 537
Target Start/End: Complemental strand, 58803 - 58724
Alignment:
Q  460 aaattaaatcatttttaatcatcctct--ttattcttcatctgcagaaggggattttgctagtctaaattatacattttg 537  Q
    |||||||||||||||||||||||||||  || ||||||||||||||||||||| ||| |||  |||||||||||||||||    
T  58803 aaattaaatcatttttaatcatcctctctttcttcttcatctgcagaaggggactttactaacctaaattatacattttg 58724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 147 - 305
Target Start/End: Complemental strand, 6178155 - 6177996
Alignment:
Q  147 ggcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtga 246  Q
    |||||||| |||| |||||| ||| ||||||||||  |||||| ||||| |||||||||||  |||| ||  ||||||||||||||||||||| |  ||     
T  6178155 ggcttctacggtgcagtcaaaaaactgacttttttagaaaagttattttgtttagccaatagtataactgccgatgtcatgtcagctagtgtcatgttgg 6178056  T
Q  247 agaaccactataagactaaa-tatatcttattacaaatcagtcatcttacaaaatgttaa 305  Q
     | |||||| ||  |||||| | || |||||||||||||||||||| |||||||| ||||    
T  6178055 tggaccactctagaactaaactttaccttattacaaatcagtcatcgtacaaaatattaa 6177996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 172 - 305
Target Start/End: Complemental strand, 19073708 - 19073574
Alignment:
Q  172 tgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaagaaccactataagactaaa-tata 270  Q
    ||||||||||| |||||| ||||||||||| |||||  ||||||||||||||||||||||  |||||| |  ||  |||||||| ||| |||||| | ||    
T  19073708 tgacttttttgtaaaagttattttatttagtcaatagtataattgttgatgtcatgtcagtcagtgtcctgctggtgaaccactttaaaactaaatttta 19073609  T
Q  271 tcttattacaaatcagtcatcttacaaaatgttaa 305  Q
     ||||||||||||||||| || || ||||| ||||    
T  19073608 ccttattacaaatcagtcctcgtataaaatattaa 19073574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 277 - 350
Target Start/End: Complemental strand, 27355218 - 27355145
Alignment:
Q  277 tacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaataaaatcattt 350  Q
    ||||||||||||||  |||||||| | || |||||||||||||||| |||||||| ||||||||||||||||||    
T  27355218 tacaaatcagtcataatacaaaatatcaactacttttgatttattagcttattttgtttaaaataaaatcattt 27355145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 277 - 350
Target Start/End: Original strand, 45411951 - 45412024
Alignment:
Q  277 tacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaataaaatcattt 350  Q
    ||||||||||||||  |||||||| | || |||||||||||||||| |||||||| ||||||||||||||||||    
T  45411951 tacaaatcagtcataatacaaaatatcaactacttttgatttattagcttattttgtttaaaataaaatcattt 45412024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 147 - 306
Target Start/End: Original strand, 18514399 - 18514559
Alignment:
Q  147 ggcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtga 246  Q
    |||||||| |||| ||||| |||| ||| |||||||||||||| ||||| |||||| ||||  |||| |||| ||||||||||| |||||||| |  ||     
T  18514399 ggcttctacggtggagtcaggaaactgaattttttgaaaaagttattttgtttagctaatagtataactgttaatgtcatgtcaactagtgtcgtgctgg 18514498  T
Q  247 agaaccactataagact-aaatatatcttattacaaatcagtcatcttacaaaatgttaat 306  Q
     | |||||||||||||| || | ||  |||||| |||||| ||||| |||||||| |||||    
T  18514499 tggaccactataagactgaactttactttattataaatcaatcatcatacaaaatattaat 18514559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 300
Target Start/End: Original strand, 34441573 - 34441701
Alignment:
Q  173 gacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaagaaccactataagactaa-atatat 271  Q
    ||||||||||||||||| ||||||||| | |||||  |||||||  | | ||||||||||||||||| |  ||  | | |||| ||| |||||  | |||    
T  34441573 gacttttttgaaaaagttattttatttggtcaatagtataattgccgttatcatgtcagctagtgtcatgttggtggatcactttaaaactaagctttat 34441672  T
Q  272 cttattacaaatcagtcatcttacaaaat 300  Q
    ||||||||||||||||| || ||||||||    
T  34441673 cttattacaaatcagtcctcatacaaaat 34441701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 340
Target Start/End: Original strand, 40912484 - 40912545
Alignment:
Q  273 ttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaat 340  Q
    |||||||||||||||| || |||||||| ||||||      |||||||||||||||||||||||||||    
T  40912484 ttattacaaatcagtcctcatacaaaatattaatt------gatttattaacttattttatttaaaat 40912545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 536
Target Start/End: Original strand, 43445543 - 43445627
Alignment:
Q  460 aaattaaatcatttttaatcatcctct--ttattcttcatctgca------gaaggggattttgctagtctaaattatacatttt 536  Q
    ||||||||| |||||||||||||||||  || |||||||||| ||      ||||||||||||||||  ||||||||||||||||    
T  43445543 aaattaaattatttttaatcatcctctctttcttcttcatcttcatatgcggaaggggattttgctaacctaaattatacatttt 43445627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 4e-55; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 148 - 340
Target Start/End: Complemental strand, 14246572 - 14246379
Alignment:
Q  148 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaa 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||| ||||||||||  |||||||||||     
T  14246572 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgccatgtcagctgatgtctttgtgat 14246473  T
Q  248 gaaccactataagactaaa-tatatcttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaat 340  Q
    | ||||||||||||||||| | ||  ||||||||||| |||| |   ||||||| ||||||| ||||||||||| |||||||||||||||||||    
T  14246472 ggaccactataagactaaattttactttattacaaataagtccttgaacaaaatattaattatttttgatttataaacttattttatttaaaat 14246379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 8015334 - 8015191
Alignment:
Q  1 atttttatcctactttttc-cttcttaatcacatcgtggtgggtcctaattgtgatttattccattaacccttccattagttagttactagccaccatta 99  Q
    ||||||| |||||||| || |||||||||||||| |||||||  ||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||    
T  8015334 atttttaccctactttctcacttcttaatcacatagtggtggaccctaattgtaatttattccattaactctttcattagttagttactagccaccatta 8015235  T
Q  100 accctttcattttccttcaattagtaacaacccattatacttat 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  8015234 accctttcattttccttcaattagtaacaacccattatacttat 8015191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 184 - 375
Target Start/End: Complemental strand, 5813587 - 5813397
Alignment:
Q  184 aaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaagaaccactataagactaaatatatcttattacaaat 283  Q
    |||||||||||| ||||||||||| | |   | |||||| |||||||| |||||||||| ||| | |||||| ||||||||||| ||  |||||| ||||    
T  5813587 aaaagtcattttgtttagccaatagcgt---tcttgatgccatgtcagttagtgtctttatgatggaccactgtaagactaaatttactttattaaaaat 5813491  T
Q  284 cagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaataaaatcat--ttttgttcttcatatgttcattttgtt 375  Q
     ||||||  || ||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||| |||||||||||||    
T  5813490 aagtcattgtataaaatattaattacttttgatttattaacttattttatttaaaataaaatcatttttttgttattcatctgttcattttgtt 5813397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 156 - 377
Target Start/End: Original strand, 22721927 - 22722126
Alignment:
Q  156 ggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaagaaccact 255  Q
    |||||||| |||||||||||||||||| |||||||||||| ||||||||||   |||| |||||||| ||||||||||||||||||  ||| | ||||||    
T  22721927 ggtgtagttaagaaaatgacttttttggaaaagtcattttgtttagccaatggaataaatgttgatgccatgtcagctagtgtcttgttgatggaccact 22722026  T
Q  256 ataagactaaatatatcttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaataaaatcatttttgtt 355  Q
    |                      ||||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22722027 a----------------------caaatcattcatcgtacaaaatattgattacttttgatttattaacttattttatttaaaataaaatcatttttgtt 22722104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 148 - 340
Target Start/End: Original strand, 5914938 - 5915125
Alignment:
Q  148 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaa 247  Q
    |||||||||||| |||||| |||||||||||||| ||||||||||||| |||| |||||| || | ||||| ||  |||||||||||||||||||||||     
T  5914938 gcttctatggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaatagcaaagttgttcataccatgtcagctagtgtctttgtgat 5915037  T
Q  248 gaaccactataagactaaa-tatatcttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaat 340  Q
    | |||||| ||| |||||| | ||  ||||||||||| |||| || || ||||| ||||      |||||||||||||||||||||||||||||    
T  5915038 ggaccactgtaacactaaattttactttattacaaattagtcctcataaaaaatattaa------ttgatttattaacttattttatttaaaat 5915125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 37795210 - 37795138
Alignment:
Q  148 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttga 220  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||| || |||||||| |||| |||||||    
T  37795210 gcttctatggtgtagttaagaaaatgactcttttgaaaaagtcattttgttcagccaatatcatagttgttga 37795138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 250 - 350
Target Start/End: Original strand, 28292430 - 28292532
Alignment:
Q  250 accactataagactaaa-tatatcttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaac-ttattttatttaaaataaaatca 347  Q
    |||||| |||||||||| | || |||||||||||||| | ||| |||||||| ||||||||||||||||||||||| |||||||| ||| ||| ||||||    
T  28292430 accactctaagactaaactttaccttattacaaatcaataatcatacaaaatattaattacttttgatttattaactttattttaattagaattaaatca 28292529  T
Q  348 ttt 350  Q
    |||    
T  28292530 ttt 28292532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 17612686 - 17612623
Alignment:
Q  176 ttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtc 239  Q
    |||||||||||||| |||||||||||||||||  |||| ||| |||||||||||||||||||||    
T  17612686 ttttttgaaaaagttattttatttagccaatagtataactgtcgatgtcatgtcagctagtgtc 17612623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 156 - 239
Target Start/End: Complemental strand, 9743959 - 9743876
Alignment:
Q  156 ggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtc 239  Q
    |||| |||||| ||| |||||||||||||||||| ||||| |||| ||||||| ||||||||  | ||||||| | ||||||||    
T  9743959 ggtgaagtcaaaaaattgacttttttgaaaaagttattttgtttaaccaataatataattgtcaacgtcatgttaactagtgtc 9743876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 334
Target Start/End: Complemental strand, 47237511 - 47237449
Alignment:
Q  272 cttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatt 334  Q
    ||||||||||||| ||| || || |||   |||||||||||||||||||||||||||||||||    
T  47237511 cttattacaaatcggtcctcatagaaagcattaattacttttgatttattaacttattttatt 47237449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 47073065 - 47073130
Alignment:
Q  148 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataa 213  Q
    ||||||||||||||||||  ||| ||||| |||||||||||| |||||||||  |||||| |||||    
T  47073065 gcttctatggtgtagtcagtaaattgactattttgaaaaagttattttattttaccaatagcataa 47073130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 28292363 - 28292422
Alignment:
Q  148 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaata 207  Q
    |||||||  ||| |||||||||  |||||||||| ||||||| |||||||||||||||||    
T  28292363 gcttctacagtgcagtcaagaacctgacttttttaaaaaagttattttatttagccaata 28292422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 3043040 - 3042999
Alignment:
Q  148 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagt 189  Q
    ||||||| |||| |||||||||| ||||||||||||||||||    
T  3043040 gcttctacggtgcagtcaagaaattgacttttttgaaaaagt 3042999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 4205405 - 4205364
Alignment:
Q  148 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagt 189  Q
    ||||||| |||| |||||||||| ||||||||||||||||||    
T  4205405 gcttctacggtgcagtcaagaaactgacttttttgaaaaagt 4205364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 7703938 - 7703889
Alignment:
Q  140 ttatggaggcttctatggtgtagtcaagaaaatgacttttttgaaaaagt 189  Q
    ||||||| ||||||| |||| ||||| |||| ||||||||||||||||||    
T  7703938 ttatggaagcttctacggtgcagtcatgaaactgacttttttgaaaaagt 7703889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 36493479 - 36493520
Alignment:
Q  148 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagt 189  Q
    |||||||||||| ||||| |||| ||||||||||||||||||    
T  36493479 gcttctatggtgcagtcaggaaattgacttttttgaaaaagt 36493520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 6e-48; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 149 - 341
Target Start/End: Original strand, 1872582 - 1872774
Alignment:
Q  149 cttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaag 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| ||||||||| ||||||||||| ||||||||||| |    
T  1872582 cttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttgttcagccattaacatagttgttgatgccatgtcagctaatgtctttgtgatg 1872681  T
Q  249 aaccactataagactaaa-tatatcttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaata 341  Q
     | || | ||| || ||| | ||  |||||| ||||||||| |  |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1872682 ga-cattgtaaaaccaaattttactttattataaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaata 1872774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 147 - 300
Target Start/End: Original strand, 4108582 - 4108736
Alignment:
Q  147 ggcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtga 246  Q
    ||||| || |||| |||||| ||| |||||||||||||||||| ||||| ||||| |||||| |||||||  | | ||||||||||||||||| |  ||     
T  4108582 ggcttttacggtgaagtcaaaaaattgacttttttgaaaaagttattttgtttagtcaataatataattgccgttatcatgtcagctagtgtcatgttgg 4108681  T
Q  247 agaaccactataagactaa-atatatcttattacaaatcagtcatcttacaaaat 300  Q
     | |||||| ||| |||||  | |||||||||||||| ||||| || ||||||||    
T  4108682 tggaccactttaaaactaagctttatcttattacaaaacagtcttcatacaaaat 4108736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 172 - 305
Target Start/End: Complemental strand, 3038761 - 3038627
Alignment:
Q  172 tgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaagaaccactataagactaaa-tata 270  Q
    |||||||||| ||||| | ||||| |||||||||||  | ||||| ||||||||||||| | ||||||||  ||  | |||||| ||| |||||| | ||    
T  3038761 tgacttttttaaaaaaattattttgtttagccaatagtagaattgctgatgtcatgtcaacaagtgtcttgctggtggaccactctaaaactaaacttta 3038662  T
Q  271 tcttattacaaatcagtcatcttacaaaatgttaa 305  Q
     |||||||||||||| ||||| |||||||| ||||    
T  3038661 ccttattacaaatcaatcatcatacaaaatattaa 3038627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 30650903 - 30650961
Alignment:
Q  148 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaat 206  Q
    ||||||| |||| |||||||||| |||||||||||||||||| ||||| ||||| ||||    
T  30650903 gcttctacggtgcagtcaagaaattgacttttttgaaaaagttattttgtttagtcaat 30650961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 172 - 300
Target Start/End: Original strand, 23176479 - 23176608
Alignment:
Q  172 tgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaagaaccactataagactaa-atata 270  Q
    |||||||||||||||||| ||||| ||||  |||||  ||||||   ||| ||||||||||||||||| |  ||| | |||||| ||| |||||  | ||    
T  23176479 tgacttttttgaaaaagttattttgtttattcaatagtataatttccgatatcatgtcagctagtgtcatgttgatggaccactctaaaactaagcttta 23176578  T
Q  271 tcttattacaaatcagtcatcttacaaaat 300  Q
    ||||||||||||| |||| || ||||||||    
T  23176579 tcttattacaaattagtcctcatacaaaat 23176608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 305
Target Start/End: Complemental strand, 7291073 - 7290941
Alignment:
Q  174 acttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaagaaccactataagactaaa-tatatc 272  Q
    |||||||||||||| | ||||| ||||| |||||  |||| ||| |||||||| ||| |||||||| |  |   |||||||| ||| |||||| | ||||    
T  7291073 acttttttgaaaaaattattttgtttaggcaatagtataactgtcgatgtcatatcaactagtgtcctgtttgtgaaccactctaaaactaaactttatc 7290974  T
Q  273 ttattacaaatcagtcatcttacaaaatgttaa 305  Q
    ||||||||||||| || || |||||||| ||||    
T  7290973 ttattacaaatcaatcctcatacaaaatattaa 7290941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 5018606 - 5018555
Alignment:
Q  149 cttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttattta 200  Q
    ||||||||||| | ||| |||| |||||||||||||||||| ||||||||||    
T  5018606 cttctatggtgcaatcacgaaattgacttttttgaaaaagttattttattta 5018555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 18756339 - 18756426
Alignment:
Q  152 ctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtc 239  Q
    |||||||| |||||  ||| ||| ||||| |||||||| ||||| |||||||||||| |||||||  ||||| |||| ||||| ||||    
T  18756339 ctatggtgcagtcagaaaattgattttttggaaaaagttattttgtttagccaataatataattgccgatgttatgttagctaatgtc 18756426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 6446181 - 6446239
Alignment:
Q  149 cttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaata 207  Q
    |||||| |||| |||||||||| |||||||||| |||||||  |||| |||||||||||    
T  6446181 cttctacggtgcagtcaagaaactgacttttttaaaaaagttgttttttttagccaata 6446239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 5299716 - 5299757
Alignment:
Q  148 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagt 189  Q
    |||||||||||| ||||| |||| ||||||||||||||||||    
T  5299716 gcttctatggtgcagtcatgaaactgacttttttgaaaaagt 5299757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 37970289 - 37970330
Alignment:
Q  148 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagt 189  Q
    |||||||||||| ||||| |||| ||||||||||||||||||    
T  37970289 gcttctatggtgcagtcaggaaagtgacttttttgaaaaagt 37970330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 305
Target Start/End: Original strand, 6267295 - 6267331
Alignment:
Q  269 tatcttattacaaatcagtcatcttacaaaatgttaa 305  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  6267295 tatcttattacaaatcagtcatcatacaaaatattaa 6267331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 148 - 340
Target Start/End: Original strand, 4487724 - 4487911
Alignment:
Q  148 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaa 247  Q
    |||||||||||| ||| || |||||||||||||| ||||||||||||| |||| |||||| |||| ||||| ||| |||||||||||||||||||||||     
T  4487724 gcttctatggtgcagttaaaaaaatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagctagtgtctttgtgat 4487823  T
Q  248 gaaccactataagactaaa-tatatcttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaat 340  Q
    | |||||| ||| |||||| | ||  |||||||||||||||| || |||||||  ||||      |||||||||||||||||||||||||||||    
T  4487824 ggaccactgtaacactaaattttactttattacaaatcagtcctcatacaaaacattaa------ttgatttattaacttattttatttaaaat 4487911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 148 - 336
Target Start/End: Complemental strand, 25441867 - 25441684
Alignment:
Q  148 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaa 247  Q
    |||||||||||| |||||| |||||||||||||| ||||||||||||| |||| |||||| |||| ||||| ||||||||| |||||||||||||||||     
T  25441867 gcttctatggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgtcatgttagctagtgtctttgtgat 25441768  T
Q  248 gaaccactataagactaaa-tatatcttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttattta 336  Q
    | |||||| ||| |||||| | ||  |||| ||||||||||| || |||||||| ||||      |||||||||||||||||||||||||    
T  25441767 ggaccactgtaacactaaattttactttatcacaaatcagtcctcatacaaaatattaa------ttgatttattaacttattttattta 25441684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 293 - 377
Target Start/End: Original strand, 18309160 - 18309243
Alignment:
Q  293 tacaaaatgttaattacttttgatttattaacttattttatttaaaataaaatcatttttgttcttcatatgttcattttgtttg 377  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| | |||||||||||||    
T  18309160 tacaaaatattaattacttttgatttattaacttattt-atttaaaataaaatcattgttgttcttcatctattcattttgtttg 18309243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 151 - 307
Target Start/End: Original strand, 18306552 - 18306709
Alignment:
Q  151 tctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttgtgaagaa 250  Q
    ||||||||||||| ||| |||||||||||||| ||| |||||||| |||||||||||  |||| |||||||| ||||||||||||||||||  ||| | |    
T  18306552 tctatggtgtagttaaggaaatgacttttttggaaatgtcattttgtttagccaatagaataaatgttgatgccatgtcagctagtgtcttgctgatgga 18306651  T
Q  251 ccactataaga-ctaaatatatcttattacaaatcagtcatcttacaaaatgttaatt 307  Q
    ||||| | ||| | || | || |||||||||||||| || || |||||||| ||||||    
T  18306652 ccactgttagatcaaattttaccttattacaaatcaatcctcgtacaaaatattaatt 18306709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 273 - 375
Target Start/End: Original strand, 26819709 - 26819812
Alignment:
Q  273 ttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaataaaatcatt-tttgttcttcatatgttcattt 371  Q
    ||||||||||| || |||  |||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||| |||||| ||||| |||| ||||    
T  26819709 ttattacaaataagccattgtacaaaatattaattacttttgatttataaacttattttatttaaaataaaataattatttgttattcatctgtttattt 26819808  T
Q  372 tgtt 375  Q
    ||||    
T  26819809 tgtt 26819812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 239
Target Start/End: Original strand, 11083826 - 11083917
Alignment:
Q  148 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtc 239  Q
    ||||||| |||| |||||| ||| | |||||||||||||||| |||||||||||  ||||  ||||||||  || |||||||||||||||||    
T  11083826 gcttctacggtgaagtcaaaaaatttacttttttgaaaaagttattttatttagttaatagtataattgtcaatatcatgtcagctagtgtc 11083917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 4104372 - 4104305
Alignment:
Q  172 tgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtc 239  Q
    |||||||||||||||||| ||||| | | | |||||  |||||||| ||||||||||||| |||||||    
T  4104372 tgacttttttgaaaaagttattttgtcttgtcaatagtataattgtcgatgtcatgtcagttagtgtc 4104305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 30341572 - 30341505
Alignment:
Q  172 tgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtc 239  Q
    |||||| ||||| ||||| ||||| |||||||| ||  ||||||| ||||||||||| ||||||||||    
T  30341572 tgacttgtttgagaaagttattttgtttagccagtagtataattgctgatgtcatgttagctagtgtc 30341505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 34994168 - 34994120
Alignment:
Q  191 attttatttagccaataacataattgttgatgtcatgtcagctagtgtc 239  Q
    ||||| |||||||||||  |||| ||||||||||||||| |||||||||    
T  34994168 attttgtttagccaatataataagtgttgatgtcatgtcggctagtgtc 34994120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 250 - 350
Target Start/End: Original strand, 11443 - 11544
Alignment:
Q  250 accactataagactaaatat-atcttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaataaaatcat 348  Q
    |||||| ||||||||||| | ||||||||||||||||||| || ||||||||  ||||||||| | ||||||||||||||||| |||||||| |||||||    
T  11443 accactctaagactaaattttatcttattacaaatcagtcctcatacaaaataataattacttataatttattaacttattttgtttaaaattaaatcat 11542  T
Q  349 tt 350  Q
    ||    
T  11543 tt 11544  T

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Target: scaffold0003 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 272 - 350
Target Start/End: Complemental strand, 107982 - 107904
Alignment:
Q  272 cttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaataaaatcattt 350  Q
    ||||||||||||||||| || || ||||  | |||||||||| ||||||||||||||||||||||||||||||||||||    
T  107982 cttattacaaatcagtcttcatagaaaacataaattacttttaatttattaacttattttatttaaaataaaatcattt 107904  T

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Target: scaffold0001 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 348
Target Start/End: Complemental strand, 66025 - 65949
Alignment:
Q  272 cttattacaaatcagtcatcttacaaaatgttaattacttttgatttattaacttattttatttaaaataaaatcat 348  Q
    ||||||| |||| |||| || |||||||| ||||||||||||||||||||||||||| ||||||| ||| |||||||    
T  66025 cttattataaattagtcctcatacaaaatattaattacttttgatttattaacttatattatttataattaaatcat 65949  T

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Target: scaffold0008 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 267695 - 267658
Alignment:
Q  150 ttctatggtgtagtcaagaaaatgacttttttgaaaaa 187  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  267695 ttctatggtgcagtcaagaaactgacttttttgaaaaa 267658  T

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