View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15718_low_8 (Length: 535)
Name: NF15718_low_8
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15718_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 16 - 266
Target Start/End: Complemental strand, 33495426 - 33495176
Alignment:
| Q |
16 |
ataatgcagtaacaccagaatttaagtcatgtattaacaatcttatctctactgtcgtgttaccaagtgcagctaccgtgccagaatctatggctttgat |
115 |
Q |
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| T |
33495426 |
ataatgcagtaacaccagaatttaagtcatgtattaacaatcttatctctactgtggtgttaccaagtgcagctaccgtgccagaatctatggctttgat |
33495327 |
T |
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| Q |
116 |
taatgggtttttgggtttttctcataagaattttactaagagattagaagaaagtaaagttaatgcttggattgattcaatgagagctgcttctccaact |
215 |
Q |
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| T |
33495326 |
taatgggtttttgggtttttctcgtaagaattttactaagagattagaagaaagtaaagttaatgcttggattgattcaatgagagctgcttctccaact |
33495227 |
T |
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| Q |
216 |
cgtgtcaaatcttcagaaaatcaggaaaaatgttcttggattgtaagcata |
266 |
Q |
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| T |
33495226 |
cgtgtcaaatcttcagaaaatcaggaaaaatgttcttggattgtaagcata |
33495176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 306 - 518
Target Start/End: Complemental strand, 33495119 - 33494907
Alignment:
| Q |
306 |
aatttttagttgacttcttattatttgtgcttgcagctttatcatccttcagcactgaaattgtttgatcaaatattgtttagtgcaaaaggaaaacaga |
405 |
Q |
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| T |
33495119 |
aatttttagttgacttcttattatttgtgcttgcagctttatcacccttcagcactgaaattgtttgatcaaatattgtatagtgcaaaaagaaaacaga |
33495020 |
T |
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| Q |
406 |
tagtgttttttcttgactatgatggtactctctcacctattgttgccgatccagaaaaagctttcatgactagaaaggtatttttatttatttttccttt |
505 |
Q |
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| T |
33495019 |
tagtgttttttcttgactatgatggtactctctcacctattgttgccgatccagaaaaagctttcatgactagaaaggtatttttatttatttttccttt |
33494920 |
T |
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| Q |
506 |
gttatgttcattc |
518 |
Q |
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| T |
33494919 |
gttatgttcattc |
33494907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 37980434 - 37980388
Alignment:
| Q |
183 |
tggattgattcaatgagagctgcttctccaactcgtgtcaaatcttc |
229 |
Q |
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| T |
37980434 |
tggattgattctatgagagcttcttctccaactcatgtcaaatcttc |
37980388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 466
Target Start/End: Complemental strand, 26144144 - 26144090
Alignment:
| Q |
412 |
tttttcttgactatgatggtactctctcacctattgttgccgatccagaaaaagc |
466 |
Q |
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| T |
26144144 |
tttttcttgactatgatggaactctctccccaattgtagcagatccagataaagc |
26144090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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