View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15718_low_9 (Length: 500)

Name: NF15718_low_9
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15718_low_9
NF15718_low_9
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-500)||(231619-232118)
[»] chr1 (4 HSPs)
chr1 (122-334)||(30590827-30591039)
chr1 (125-334)||(25840097-25840306)
chr1 (2-123)||(25841306-25841426)
chr1 (1-123)||(30591294-30591416)


Alignment Details
Target: scaffold0003 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Complemental strand, 232118 - 231619
Alignment:
Q  1 gctgctaactttgcttcggcctctttgttctgtagcccctttaaatcattctttaaagcactcagtgaagattccaattcttgaattcgagaactcatgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  232118 gctgctaactttgcttcggcctctttgttctgtagcccctttaaatcattctttaaagcactcagtgaagattccaattcttgaattcgagaactcatgt 232019  T
Q  101 cccaattttgctcatactccaactgatattttaattttgaaagttggctactcaggttcagtctctcctctgctgcattttgagaagccttgagttgagt 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  232018 cccgattttgctcatactccaactgatattttaattttgaaagttggctactcaggttcagtctctcctctgctgcattttgagaagccttgagttgagt 231919  T
Q  201 ttcttcatactcgcgaatgtttgcaaccccaaatgacttgctgaagtctttgtacatctcatcagtgatttcatttatactcttctcaagctcgcgtatt 300  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  231918 ttcttcatactcgcgaatgtttgcaaccccaactgacttgctgaagtctttgtatatctcatcggtgatttcatttatactcttctcaagctcgcgtatt 231819  T
Q  301 tctgcatttctcttttcaacagcatctcttaacttgatcagttctggactaactcgttcaatttgttttttgatagtccccttttcatcgctcaatgttg 400  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  231818 tctgcatttctcttttcaacagcagctcttaacttgatcagttctggactaactcgttcaatttgttttttgatagtccccttttcatcgctcaatgttg 231719  T
Q  401 gaagcttcttttcaatgcattgcttttcaatctcagcatattgaactttcttcttcagttcgctaattttttcctctacttcggacactttaatatgatg 500  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  231718 gaagcttcttttcaatgcattgcttttcaatctcagcatattgagctttcttcttgagttcgctaattttttcctctacttcagacactttaatatgatg 231619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 122 - 334
Target Start/End: Complemental strand, 30591039 - 30590827
Alignment:
Q  122 actgatattttaattttgaaagttggctactcaggttcagtctctcctctgctgcattttgagaagccttgagttgagtttcttcatactcgcgaatgtt 221  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||||||  | |||||| | |||||||| || ||||||||||||||||||||||    
T  30591039 actgatattttaattttgaaagttggctactcagtttcagcctctcctctgctagactttgagcatccttgagtcgattttcttcatactcgcgaatgtt 30590940  T
Q  222 tgcaaccccaaatgacttgctgaagtctttgtacatctcatcagtgatttcatttatactcttctcaagctcgcgtatttctgcatttctcttttcaaca 321  Q
    ||||||||||| |||||||||||| |||||||| |||  |||||||||||||||||| |||||||||||     ||| ||||  ||| ||||||||||||    
T  30590939 tgcaaccccaactgacttgctgaattctttgtagatccgatcagtgatttcatttatcctcttctcaagagtatgtaattctttattcctcttttcaaca 30590840  T
Q  322 gcatctcttaact 334  Q
    |||||||||||||    
T  30590839 gcatctcttaact 30590827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 125 - 334
Target Start/End: Complemental strand, 25840306 - 25840097
Alignment:
Q  125 gatattttaattttgaaagttggctactcaggttcagtctctcctctgctgcattttgagaagccttgagttgagtttcttcatactcgcgaatgtttgc 224  Q
    ||||||||||||| ||||||||| | ||||| ||||| ||||||||||||  | |||||| | ||||||||||| ||||||||||||| |||| |||| |    
T  25840306 gatattttaatttcgaaagttgggtgctcagtttcagcctctcctctgctagactttgagcatccttgagttgattttcttcatactcacgaaggtttac 25840207  T
Q  225 aaccccaaatgacttgctgaagtctttgtacatctcatcagtgatttcatttatactcttctcaagctcgcgtatttctgcatttctcttttcaacagca 324  Q
    || ||||| |||||||||||| | |||||| |||  ||| |||||||||||||| |||||||||||     ||| ||||  ||| |||||||||||| ||    
T  25840206 aatcccaactgacttgctgaattttttgtaaatccaatcggtgatttcatttatcctcttctcaagagtatgtaattctttattcctcttttcaacaaca 25840107  T
Q  325 tctcttaact 334  Q
    ||||||||||    
T  25840106 tctcttaact 25840097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 25841426 - 25841306
Alignment:
Q  2 ctgctaactttgcttcggcctctttgttctgtagcccctttaaatcattctttaaagcactcagtgaagattccaattcttgaattcgagaactcatgtc 101  Q
    ||||| |||||||||| |||||||||| ||||| ||  ||||||||||||| ||||||||| |  ||||||||||||||||||||||| ||||| |||||    
T  25841426 ctgctgactttgcttcagcctctttgt-ctgtacccgttttaaatcattctctaaagcacttacagaagattccaattcttgaattcgtgaacttatgtc 25841328  T
Q  102 ccaattttgctcatactccaac 123  Q
    |  |||||||||||||||||||    
T  25841327 ctgattttgctcatactccaac 25841306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 30591416 - 30591294
Alignment:
Q  1 gctgctaactttgcttcggcctctttgttctgtagcccctttaaatcattctttaaagcactcagtgaagattccaattcttgaattcgagaactcatgt 100  Q
    ||||||||||| ||||| ||||||||| | ||||  || ||||||||| |||  |||||||| |   ||||||||||||||||||| || ||||||||||    
T  30591416 gctgctaacttcgcttcagcctctttggtatgtactccttttaaatcaatctccaaagcacttacgaaagattccaattcttgaatccgtgaactcatgt 30591317  T
Q  101 cccaattttgctcatactccaac 123  Q
    ||| |||||| ||||||||||||    
T  30591316 cccgattttgttcatactccaac 30591294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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