View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15719_high_1 (Length: 653)
Name: NF15719_high_1
Description: NF15719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15719_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 33 - 611
Target Start/End: Complemental strand, 34899975 - 34899398
Alignment:
| Q |
33 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagttcttctctcgctatttgatgtcaacaaaagctaa |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34899975 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagttcttctctcgctatttgatgtcaacaaaagctaa |
34899876 |
T |
|
| Q |
133 |
attgtgtcttcccctgcgtgtatgcaaccttatagtctcaaaattttccttccattctcaccaaacatgaaaggtatgtatcttccaactacaaaatttt |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34899875 |
attgtgtcttcccctgcgtgtatgcaaccttatagtctcaaaattttccttccattctcaccaaacatgaaaggtatgtatcttccaactacaaaatttt |
34899776 |
T |
|
| Q |
233 |
atgtgaatttgtgcagatgatatcactgacaatatgataatttggtatctcttgcctatcttattataacatttgcatatgcttgtgtggtacgttacgc |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34899775 |
atgtgaatttgtgcagatgatatcactgacaatatgataatttggtatctcttgcctatcttattataacatttgcatatgcttgtgtggtac-ttacgc |
34899677 |
T |
|
| Q |
333 |
ataaaaaccaagtggaacatgtcaactgacccactaattgaggttctcctaataactaagaacatttttagagacacattttcgatattcaattttctgc |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34899676 |
ataaaaaccaagtggaacatgtcaactgacccactagttgaggttctcctaataactaagaacatttttagagacacattttcgatattcaattttctgc |
34899577 |
T |
|
| Q |
433 |
attcagctaccaactaattatttgtaagtcttagcagacacttcttcatagannnnnnnngttgaagaagtcaaaaattatattaaacgaaaaagagatc |
532 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34899576 |
attcagctaccaactaattatttgtaagtcttagcagacacttcttcatagattttttttgttgaagaagtcaaaaattatattaaacgaaaaagagatc |
34899477 |
T |
|
| Q |
533 |
ccaataaatacaagttgagtttaagaaggatccaaatagcaccacaagaaacaattagagaagtgtcaaaacaaaaggg |
611 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34899476 |
ccaataaatacaagttgagtttaagaaggatccaaatagcaccacaagaaacaattagagaagtgtcaaaacaaaaggg |
34899398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University