View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1572-INSERTION-1 (Length: 172)
Name: NF1572-INSERTION-1
Description: NF1572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1572-INSERTION-1 |
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Alignment Details
Target: chr1 (Bit Score: 107; Significance: 6e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 6e-54
Query Start/End: Original strand, 35 - 160
Target Start/End: Original strand, 49890539 - 49890665
Alignment:
| Q |
35 |
cattactgtgttaattaaaaatttgtagcattttcccttaagaaatctaactcaattaa-ctacaacttttttaatttgggtcaaaatctaatccgttca |
133 |
Q |
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| T |
49890539 |
catttctgtgttaattaaaaatttgtagcattttcccttaagaaatctaactcaattaaactacaacttttttaatttgggccaaaatctaatccgttca |
49890638 |
T |
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| Q |
134 |
tcctccttccttaaattcgttatcaat |
160 |
Q |
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| T |
49890639 |
tcttccttccttaaattcgttatcaat |
49890665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 49890463 - 49890492
Alignment:
| Q |
6 |
caaaactaacattacaatcacattctaagc |
35 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
49890463 |
caaaactaacattacaatcacattctaagc |
49890492 |
T |
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