View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1572-INSERTION-2 (Length: 247)
Name: NF1572-INSERTION-2
Description: NF1572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1572-INSERTION-2 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 21579822 - 21580062
Alignment:
| Q |
8 |
tcaatacatttctctatcaacaaatccttagcaaaatcaagacccttgttagatataacaccagagatgaaaccatcttcaaagggttgaacatagccac |
107 |
Q |
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| T |
21579822 |
tcaatacatttctctatcaacaaatccttagcaaaatcaagacccttgttagatataacaccagagatgaaaccatctttaaagggttgaacatagccac |
21579921 |
T |
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| Q |
108 |
ttgttggaattaataaaaggtataatagaaagaagagattcaagagtgtcattag-nnnnnnnaaaagtgttgtttgttggagattggtttgtagaattg |
206 |
Q |
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| T |
21579922 |
tagttggaattaatataaggtgtaatagaaagaatagattcaagagtgtcattagttttttttgaaagtgttgtttgttggagattggtttgtggaattg |
21580021 |
T |
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| Q |
207 |
gttacgtaggtatgagtaattggttggtgttggaatttaga |
247 |
Q |
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| T |
21580022 |
gttacgtaggtatgaagaattggttggtgttggaatttaga |
21580062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 21576205 - 21576359
Alignment:
| Q |
8 |
tcaatacatttctctatcaacaaatccttagcaaaatcaagacccttgttagatataacaccagagatgaaaccatcttcaaagggttgaacatagccac |
107 |
Q |
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| T |
21576205 |
tcaatacctttctctatcaacaaatccttagcaaaatcaagacctttgttggatataacaccagagatgaaaccatcttcaaagggttggttagaagcga |
21576304 |
T |
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| Q |
108 |
ttgttggaattaataaaaggtataatagaaagaagagattcaagagtgtcattag |
162 |
Q |
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| T |
21576305 |
ttgttggaattaatagaaggtgtgatagaaagaagagattcaagagtttcattag |
21576359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 21576400 - 21576466
Alignment:
| Q |
181 |
ttgttggagatt--ggtttgtagaa-ttggttacgtaggtatgagtaattggttggtgttggaattt |
244 |
Q |
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| T |
21576400 |
ttgttggagattttggtttgtagaaattggttacgtaggtataaggaattggttggtgttggaattt |
21576466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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