View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1572-INSERTION-4 (Length: 581)
Name: NF1572-INSERTION-4
Description: NF1572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1572-INSERTION-4 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 7 - 403
Target Start/End: Original strand, 42292486 - 42292882
Alignment:
| Q |
7 |
accatgatgttgagaagattccagttgtccacgaagagccattcacagcatacaatgcaaggtggcaaatgccatttgaagaaagtggatcagattctaa |
106 |
Q |
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| T |
42292486 |
accatgatgttgagaagattccagttgtccacgaagagccattcacagcatacaatgcaaggtggcaaatgccatttgaagaaagtggatcagattctaa |
42292585 |
T |
|
| Q |
107 |
cctttattattcttttgatgtgtccggtgttcatgttatcatgttgggttcttataccgattttgcaccggattcttcacaatacaaatggcttcaaggg |
206 |
Q |
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| T |
42292586 |
cctttattattcttttgatgtgtctggtgttcatgttatcatgttgggttcttataccgattttgcaccggattcttcacaatacaaatggcttcaaggg |
42292685 |
T |
|
| Q |
207 |
gatttacagaaggttaacaggggaaaaactccttgggtagtggtgttggttcatgctccttggtataattctaatcaagctcatcagggtgaggctgaat |
306 |
Q |
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| T |
42292686 |
gatttacagaagattaacaggggaaaaactccttgggtagtggtgttggttcatgctccttggtataattctaatcaagctcatcagggtgaggctgaat |
42292785 |
T |
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| Q |
307 |
ctgttgacatgaagactgcaatggaaggtttgctctataatgcacttgttgatgtcgtttttacagggcatgttcatgcctacgaacgctttgtaag |
403 |
Q |
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| T |
42292786 |
ctgttgacatgaagactgcaatggaaggtttgctctataatgcacttgttgatgtcgtttttacagggcatgttcatgcatacgaacgctttgtaag |
42292882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 522
Target Start/End: Original strand, 42292911 - 42292943
Alignment:
| Q |
490 |
tctagttgaagtactggttcaatcgggttgaaa |
522 |
Q |
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| T |
42292911 |
tctagttgaagtgctggttcaatcgggttgaaa |
42292943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 73 - 149
Target Start/End: Complemental strand, 40336267 - 40336191
Alignment:
| Q |
73 |
aaatgccatttgaagaaagtggatcagattctaacctttattattcttttgatgtgtccggtgttcatgttatcatg |
149 |
Q |
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| T |
40336267 |
aaatgccgtttgaggaaagtggatcaacttcaaatctctattattcatttgaagttgcaggtgttcatgttatcatg |
40336191 |
T |
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