View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1572-INSERTION-5 (Length: 665)

Name: NF1572-INSERTION-5
Description: NF1572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1572-INSERTION-5
NF1572-INSERTION-5
[»] chr8 (5 HSPs)
chr8 (117-550)||(13138392-13138825)
chr8 (549-649)||(13138033-13138133)
chr8 (519-609)||(26461981-26462073)
chr8 (550-610)||(43631474-43631534)
chr8 (512-610)||(37167021-37167121)
[»] chr2 (3 HSPs)
chr2 (539-608)||(2825963-2826032)
chr2 (540-588)||(8789887-8789935)
chr2 (539-592)||(13026858-13026913)
[»] chr6 (2 HSPs)
chr6 (539-610)||(34921597-34921668)
chr6 (540-592)||(31702763-31702815)
[»] chr7 (3 HSPs)
chr7 (539-609)||(40065789-40065859)
chr7 (550-600)||(9533534-9533584)
chr7 (507-610)||(3256632-3256739)
[»] chr5 (4 HSPs)
chr5 (539-601)||(10145354-10145416)
chr5 (550-608)||(39099912-39099970)
chr5 (539-581)||(22873501-22873543)
chr5 (548-600)||(39568342-39568394)
[»] chr4 (2 HSPs)
chr4 (550-608)||(50086415-50086473)
chr4 (547-608)||(42627951-42628012)
[»] chr1 (2 HSPs)
chr1 (506-581)||(12590663-12590742)
chr1 (550-608)||(15549648-15549706)
[»] scaffold0102 (1 HSPs)
scaffold0102 (548-601)||(22669-22722)
[»] chr3 (1 HSPs)
chr3 (539-609)||(40392422-40392492)


Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 117 - 550
Target Start/End: Complemental strand, 13138825 - 13138392
Alignment:
Q  117 atataggtggtggaccccagatgaagattgagattggtgaagttgatgaagagaaaagggttgttgttggagtgaaggaagagatagaaaacaacccttt 216  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  13138825 atataggtggtggaccccagatgaagattgagaatggtgaagttgatgaagagaaaagggttgttgttggagtgaaggaagatatagaaaacaagccttt 13138726  T
Q  217 gatcacagaagctcaaaggcgtgaacttgatcatcaagtttatatttttaatcattttgcttataatcttcctcttccttattaccttttgcaatttcca 316  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13138725 gatcacagaagctcaaaggcgtgaacttgatcatcaagtttttatttttaatcattttgcttataatcttcctcttccttattaccttttgcaatttcca 13138626  T
Q  317 agtaatatgtcaggtttgttgaaatttcttatcatacccttttcaattttatagagaatagttaatgcatgttcaccnnnnnnnnnnnnnnnnnnnnaga 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    |||    
T  13138625 agtaatatgtcaggtttgttgaaatttcttatcatacccttttcaattttatagagaatagttaatgcatgttcaccttttttgttttgttttgttgaga 13138526  T
Q  417 aagagtatattttgggattgagttgattaagttgtaacttgtgagagttgtgattaacaaaaaaggtcttgcaaacgagtttgtccgagacattttttaa 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13138525 aagagtatattttgggattgagttgattaagttgtaacttgtgagagttgtgattaacaaaaaaggtcttgcaaacgagtgtgtccgagacattttttaa 13138426  T
Q  517 gcatttcaaattaaacaattacttaaaaatgtta 550  Q
    ||||||||||||||||||||||||||||||||||    
T  13138425 gcatttcaaattaaacaattacttaaaaatgtta 13138392  T

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Target: chr8; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 549 - 649
Target Start/End: Complemental strand, 13138133 - 13138033
Alignment:
Q  549 taaatattttgatttgtaatgcattgaatacacacatttttatagatacttaccacttatggcaacatttcccttaataaaaggactcccttttaagtgt 648  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  13138133 taaatattttgatttgtaatgcattgaatacacacatttttatagatacttaccacttatggcaacatttccctcaataaaaggactcctttttaagtgt 13138034  T
Q  649 c 649  Q
    |    
T  13138033 c 13138033  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 519 - 609
Target Start/End: Original strand, 26461981 - 26462073
Alignment:
Q  519 atttcaaattaaacaattacttaaaa--atgttaaatattttgatttgtaatgcattgaatacacacatttttatagatacttaccacttatg 609  Q
    |||| |||||||||||||  ||||||  ||||||||||||||||||| ||||| |||||| ||| | ||||||||| |||||||  |||||||    
T  26461981 attttaaattaaacaattttttaaaaaaatgttaaatattttgatttttaatgtattgaacacatatatttttataaatacttataacttatg 26462073  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 550 - 610
Target Start/End: Complemental strand, 43631534 - 43631474
Alignment:
Q  550 aaatattttgatttgtaatgcattgaatacacacatttttatagatacttaccacttatgg 610  Q
    ||||||||| |||| ||||||||||| |||||| ||||||||| |||| ||| ||||||||    
T  43631534 aaatattttaatttctaatgcattgattacacatatttttataaatacatactacttatgg 43631474  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 512 - 610
Target Start/End: Original strand, 37167021 - 37167121
Alignment:
Q  512 tttaagcatttcaaattaaacaatta--cttaaaaatgttaaatattttgatttgtaatgcattgaatacacacatttttatagatacttaccacttatg 609  Q
    ||||| ||||||||| ||||||||||  ||| ||||  ||||||| || |||||  |||||||||||||||| |||||| ||  ||| |||||| |||||    
T  37167021 tttaaacatttcaaaataaacaattattcttcaaaaaattaaatagttcgatttccaatgcattgaatacacgcattttcatgaatagttaccatttatg 37167120  T
Q  610 g 610  Q
    |    
T  37167121 g 37167121  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 539 - 608
Target Start/End: Complemental strand, 2826032 - 2825963
Alignment:
Q  539 ttaaaaatgttaaatattttgatttgtaatgcattgaatacacacatttttatagatacttaccacttat 608  Q
    ||||||| || |||||||| |||||  |||||||||| |||||||||||||||| |||||||| ||||||    
T  2826032 ttaaaaaagtaaaatatttcgatttccaatgcattgattacacacatttttataaatacttactacttat 2825963  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 540 - 588
Target Start/End: Original strand, 8789887 - 8789935
Alignment:
Q  540 taaaaatgttaaatattttgatttgtaatgcattgaatacacacatttt 588  Q
    |||||| ||||||||||||||||| | ||||||||| |||||| |||||    
T  8789887 taaaaaagttaaatattttgatttctgatgcattgattacacatatttt 8789935  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 539 - 592
Target Start/End: Original strand, 13026858 - 13026913
Alignment:
Q  539 ttaaaaatgttaaatattttgatttgtaatgcattga--atacacacatttttata 592  Q
    ||||||||||||||||||| | |||| |||| |||||  |||||||||||||||||    
T  13026858 ttaaaaatgttaaatatttcgttttgaaatgtattgatcatacacacatttttata 13026913  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 539 - 610
Target Start/End: Original strand, 34921597 - 34921668
Alignment:
Q  539 ttaaaaatgttaaatattttgatttgtaatgcattgaatacacacatttttatagatacttaccacttatgg 610  Q
    ||||||| |||||||||||| |||| ||||||| | |||||||||||||| ||| ||| ||| |||||||||    
T  34921597 ttaaaaaagttaaatattttaatttttaatgcaattaatacacacattttcataaatatttatcacttatgg 34921668  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 540 - 592
Target Start/End: Complemental strand, 31702815 - 31702763
Alignment:
Q  540 taaaaatgttaaatattttgatttgtaatgcattgaatacacacatttttata 592  Q
    |||||| ||||| |||||| |||| ||||||||||| |||||| |||||||||    
T  31702815 taaaaaagttaagtattttaatttctaatgcattgattacacatatttttata 31702763  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 539 - 609
Target Start/End: Complemental strand, 40065859 - 40065789
Alignment:
Q  539 ttaaaaatgttaaatattttgatttgtaatgcattgaatacacacatttttatagatacttaccacttatg 609  Q
    ||||||| |||||||||||||||||  ||| ||| |||||||   ||||||||| ||||||||||||||||    
T  40065859 ttaaaaaagttaaatattttgattttcaatacatcgaatacatgtatttttataaatacttaccacttatg 40065789  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 550 - 600
Target Start/End: Complemental strand, 9533584 - 9533534
Alignment:
Q  550 aaatattttgatttgtaatgcattgaatacacacatttttatagatactta 600  Q
    ||||||||||||||  |||||||||| ||||| |||||||||| |||||||    
T  9533584 aaatattttgattttcaatgcattgattacacgcatttttataaatactta 9533534  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 610
Target Start/End: Complemental strand, 3256739 - 3256632
Alignment:
Q  507 cattttttaagcatttcaaattaaacaatta--ctt--aaaaatgttaaatattttgatttgtaatgcattgaatacacacatttttatagatacttacc 602  Q
    |||| ||||||||||||||| ||| ||||||  |||  ||||| || |||| ||| |||||  |||||| |||||||||| ||||| ||| ||||||| |    
T  3256739 cattctttaagcatttcaaaataagcaattattctttaaaaaaagtcaaatgtttcgatttccaatgcactgaatacacatattttcataaatacttatc 3256640  T
Q  603 acttatgg 610  Q
    ||||||||    
T  3256639 acttatgg 3256632  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 539 - 601
Target Start/End: Complemental strand, 10145416 - 10145354
Alignment:
Q  539 ttaaaaatgttaaatattttgatttgtaatgcattgaatacacacatttttatagatacttac 601  Q
    ||||||| || ||||||||||||||  |||||||| | |||||||||||||||| ||||||||    
T  10145416 ttaaaaaagtaaaatattttgattttgaatgcattaattacacacatttttataaatacttac 10145354  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 608
Target Start/End: Original strand, 39099912 - 39099970
Alignment:
Q  550 aaatattttgatttgtaatgcattgaatacacacatttttatagatacttaccacttat 608  Q
    |||||||| |||||  ||||||| ||||||||| ||||||||| |||||||||||||||    
T  39099912 aaatatttcgattttcaatgcatcgaatacacatatttttataaatacttaccacttat 39099970  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 539 - 581
Target Start/End: Original strand, 22873501 - 22873543
Alignment:
Q  539 ttaaaaatgttaaatattttgatttgtaatgcattgaatacac 581  Q
    ||||||| |||||||||||| |||| |||||||||||||||||    
T  22873501 ttaaaaaagttaaatattttaatttttaatgcattgaatacac 22873543  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 600
Target Start/End: Complemental strand, 39568394 - 39568342
Alignment:
Q  548 ttaaatattttgatttgtaatgcattgaatacacacatttttatagatactta 600  Q
    ||||||||||| |||| ||||| |||||||||||  ||||||||| |||||||    
T  39568394 ttaaatattttaatttctaatgtattgaatacacttatttttataaatactta 39568342  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 608
Target Start/End: Complemental strand, 50086473 - 50086415
Alignment:
Q  550 aaatattttgatttgtaatgcattgaatacacacatttttatagatacttaccacttat 608  Q
    ||||||||||||||  ||||||||||||||||| ||||| ||| || ||||||||||||    
T  50086473 aaatattttgattttcaatgcattgaatacacatattttcataaatgcttaccacttat 50086415  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 608
Target Start/End: Complemental strand, 42628012 - 42627951
Alignment:
Q  547 gttaaatattttgatttgtaatgcattgaatacacacatttttatagatacttaccacttat 608  Q
    |||||||||||||||||  ||| ||||||||| ||| ||||| ||  |||||||||||||||    
T  42628012 gttaaatattttgattttcaatacattgaatatacatattttcattaatacttaccacttat 42627951  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 581
Target Start/End: Complemental strand, 12590742 - 12590663
Alignment:
Q  506 acattttttaagcatttcaaattaaacaattactta----aaaatgttaaatattttgatttgtaatgcattgaatacac 581  Q
    ||||| ||||||||||| ||||||||||||||  ||    |||| |||||||||||||||||  ||||||||||||||||    
T  12590742 acattctttaagcattttaaattaaacaattatctattaaaaaaagttaaatattttgattttcaatgcattgaatacac 12590663  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 550 - 608
Target Start/End: Original strand, 15549648 - 15549706
Alignment:
Q  550 aaatattttgatttgtaatgcattgaatacacacatttttatagatacttaccacttat 608  Q
    |||||||| |||||  |||||||||| |||||||||||||||| |||||| | ||||||    
T  15549648 aaatatttcgattttcaatgcattgattacacacatttttataaatacttgctacttat 15549706  T

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Target: scaffold0102 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 601
Target Start/End: Original strand, 22669 - 22722
Alignment:
Q  548 ttaaatattttgatttgtaatgcattgaatacacacatttttatagatacttac 601  Q
    ||||||||||||||||  |||| ||||||| ||||||||||||| |||||||||    
T  22669 ttaaatattttgattttcaatgaattgaatccacacatttttatcgatacttac 22722  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 539 - 609
Target Start/End: Original strand, 40392422 - 40392492
Alignment:
Q  539 ttaaaaatgttaaatattttgatttgtaatgcattgaatacacacatttttatagatacttaccacttatg 609  Q
    ||||||| |||||||||||| |||| ||||||||||| |||| | ||||| ||| ||| |||| |||||||    
T  40392422 ttaaaaaagttaaatatttttatttctaatgcattgattacatatattttcataaatatttactacttatg 40392492  T

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