View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15720_high_10 (Length: 466)

Name: NF15720_high_10
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15720_high_10
NF15720_high_10
[»] chr4 (21 HSPs)
chr4 (18-460)||(2883568-2884010)
chr4 (223-351)||(2901137-2901271)
chr4 (60-186)||(18628506-18628643)
chr4 (24-93)||(54325104-54325173)
chr4 (25-93)||(30338659-30338727)
chr4 (24-122)||(7749120-7749218)
chr4 (24-93)||(46013367-46013436)
chr4 (50-111)||(43372016-43372079)
chr4 (152-195)||(19429414-19429457)
chr4 (26-93)||(21953209-21953276)
chr4 (148-187)||(44320028-44320067)
chr4 (24-87)||(46247152-46247215)
chr4 (39-93)||(927425-927479)
chr4 (27-93)||(18630617-18630683)
chr4 (148-186)||(42461330-42461368)
chr4 (24-93)||(21593079-21593147)
chr4 (56-93)||(39931371-39931408)
chr4 (24-93)||(41606120-41606189)
chr4 (142-186)||(2996646-2996690)
chr4 (56-88)||(19429560-19429592)
chr4 (148-192)||(51560236-51560280)
[»] chr5 (14 HSPs)
chr5 (29-143)||(28586781-28586897)
chr5 (26-88)||(37063146-37063208)
chr5 (40-93)||(14295456-14295509)
chr5 (24-93)||(19177413-19177482)
chr5 (143-186)||(7907956-7907999)
chr5 (142-185)||(13244505-13244548)
chr5 (26-93)||(16889671-16889738)
chr5 (24-74)||(7096213-7096263)
chr5 (142-196)||(10907451-10907505)
chr5 (56-93)||(583840-583877)
chr5 (56-93)||(32059656-32059693)
chr5 (24-93)||(35135729-35135798)
chr5 (41-97)||(29116993-29117049)
chr5 (27-140)||(32172590-32172705)
[»] chr8 (19 HSPs)
chr8 (142-192)||(7918728-7918778)
chr8 (150-192)||(1664450-1664492)
chr8 (24-73)||(14482136-14482185)
chr8 (24-142)||(38036128-38036248)
chr8 (144-192)||(9700076-9700124)
chr8 (62-143)||(11795064-11795147)
chr8 (150-192)||(1889082-1889124)
chr8 (56-123)||(6509338-6509407)
chr8 (40-143)||(11183495-11183600)
chr8 (148-194)||(42215035-42215081)
chr8 (151-192)||(24326113-24326154)
chr8 (24-93)||(34770826-34770895)
chr8 (24-145)||(35298490-35298614)
chr8 (142-186)||(2487961-2488005)
chr8 (41-93)||(4763869-4763921)
chr8 (148-192)||(16162839-16162883)
chr8 (148-192)||(29169883-29169927)
chr8 (30-74)||(39392747-39392791)
chr8 (152-192)||(43393719-43393759)
[»] scaffold0053 (1 HSPs)
scaffold0053 (24-92)||(20113-20181)
[»] scaffold0199 (1 HSPs)
scaffold0199 (150-192)||(6891-6933)
[»] chr6 (15 HSPs)
chr6 (24-142)||(32386579-32386699)
chr6 (142-192)||(32917270-32917320)
chr6 (24-93)||(5550066-5550135)
chr6 (24-72)||(2456886-2456933)
chr6 (26-93)||(29274296-29274363)
chr6 (142-212)||(4308642-4308712)
chr6 (23-92)||(507153-507222)
chr6 (24-93)||(2514636-2514705)
chr6 (24-93)||(4006648-4006717)
chr6 (24-93)||(10452427-10452496)
chr6 (24-81)||(24774692-24774749)
chr6 (142-178)||(836498-836534)
chr6 (57-93)||(9326923-9326959)
chr6 (148-192)||(10353708-10353752)
chr6 (142-186)||(27857431-27857475)
[»] chr3 (18 HSPs)
chr3 (24-93)||(20192673-20192742)
chr3 (40-145)||(24887296-24887403)
chr3 (24-90)||(27792806-27792872)
chr3 (150-192)||(45590732-45590774)
chr3 (56-142)||(23785221-23785309)
chr3 (48-93)||(31337468-31337513)
chr3 (40-92)||(49586984-49587036)
chr3 (39-143)||(34954032-34954137)
chr3 (56-143)||(1816549-1816638)
chr3 (142-195)||(37273207-37273260)
chr3 (28-93)||(40122820-40122884)
chr3 (142-191)||(49772616-49772665)
chr3 (24-92)||(1395605-1395673)
chr3 (56-145)||(2201094-2201185)
chr3 (142-174)||(21574563-21574595)
chr3 (24-92)||(41028919-41028987)
chr3 (148-192)||(44014745-44014789)
chr3 (120-185)||(46759059-46759126)
[»] chr2 (19 HSPs)
chr2 (24-93)||(10143106-10143175)
chr2 (152-195)||(757532-757575)
chr2 (26-93)||(13866825-13866892)
chr2 (24-93)||(37053528-37053597)
chr2 (142-215)||(41905840-41905913)
chr2 (56-129)||(36863654-36863729)
chr2 (26-93)||(5133708-5133775)
chr2 (24-91)||(28803575-28803642)
chr2 (24-70)||(12215741-12215787)
chr2 (24-119)||(18962077-18962174)
chr2 (148-186)||(37474844-37474882)
chr2 (56-93)||(7103550-7103587)
chr2 (50-140)||(11513858-11513950)
chr2 (24-93)||(33192127-33192196)
chr2 (145-185)||(10190342-10190382)
chr2 (148-192)||(11513975-11514019)
chr2 (40-92)||(14209227-14209279)
chr2 (27-91)||(17952770-17952834)
chr2 (57-142)||(36415689-36415776)
[»] chr7 (20 HSPs)
chr7 (24-88)||(7243578-7243642)
chr7 (142-192)||(23214928-23214978)
chr7 (24-143)||(28165025-28165146)
chr7 (142-195)||(22387840-22387893)
chr7 (24-93)||(31002695-31002764)
chr7 (153-197)||(5288195-5288239)
chr7 (27-74)||(2176846-2176893)
chr7 (152-195)||(10079283-10079326)
chr7 (24-93)||(5373159-5373228)
chr7 (142-212)||(30535636-30535706)
chr7 (26-88)||(31341130-31341192)
chr7 (24-90)||(33894557-33894622)
chr7 (24-93)||(3610807-3610876)
chr7 (24-93)||(9527157-9527226)
chr7 (40-93)||(30456517-30456570)
chr7 (56-93)||(31338474-31338511)
chr7 (29-89)||(1417203-1417263)
chr7 (24-92)||(24975838-24975906)
chr7 (56-88)||(46531499-46531531)
chr7 (29-93)||(49060479-49060543)
[»] chr1 (20 HSPs)
chr1 (148-190)||(49282548-49282590)
chr1 (41-93)||(15360845-15360897)
chr1 (105-141)||(52190146-52190182)
chr1 (24-93)||(4363699-4363767)
chr1 (56-142)||(4548687-4548775)
chr1 (28-93)||(17420141-17420206)
chr1 (151-212)||(28467515-28467576)
chr1 (142-195)||(31517684-31517737)
chr1 (151-192)||(32515388-32515429)
chr1 (56-93)||(40833902-40833939)
chr1 (148-185)||(44422778-44422815)
chr1 (24-93)||(45999355-45999424)
chr1 (148-192)||(4033964-4034008)
chr1 (105-145)||(7472328-7472368)
chr1 (29-93)||(15565899-15565963)
chr1 (142-194)||(17420276-17420328)
chr1 (57-93)||(28788605-28788641)
chr1 (148-192)||(38170637-38170681)
chr1 (148-192)||(43371838-43371882)
chr1 (41-93)||(52286629-52286681)
[»] scaffold0590 (1 HSPs)
scaffold0590 (24-74)||(1160-1210)
[»] scaffold0275 (1 HSPs)
scaffold0275 (24-74)||(2765-2815)


Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Complemental strand, 2884010 - 2883568
Alignment:
Q  18 attactagtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctatactgatttgatgagctatcatggag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2884010 attactagtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctatactgatttgatgagctatcatggag 2883911  T
Q  118 agcttacgaaaagaagctgaaaacagttgatttcataagctctcccaaacagtctcataagtgtttatgctagtaaattaattaatataagtcaaatcca 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2883910 agcttacgaaaagaagctgaaaacagttgatttcataagctctcccaaacagtctcataactgtttatgctagtaaattaattaatataagtcaaatcca 2883811  T
Q  218 gatagactctaaataccttgtgactgtattgcataaataatcttacaaaacttttaaagaatgagagaatctcaatttggcaatacctttagtacataat 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2883810 gatagactctaaataccttgtgactgtattgcataaataatcttacaaaacttttaaagaatgagaaaatctcaatttggcaatacctttagtacataat 2883711  T
Q  318 cagttgctacactttcctgttggcctccagttgccattgcctgtatatccaaagtcaatagaatgtgttaatatttattgccttagaattaatttcatta 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2883710 cagttgctacactttcctgttggcctccagttgccattgcctgtatatccaaagtcaatagaatgtgttaatatttattgccttagaattaatttcatta 2883611  T
Q  418 acttgttttgttgcaataaatgttgataattgcttcatctcac 460  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  2883610 acttgttttgttgcaataaatgttgataattgcttcttctcac 2883568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 223 - 351
Target Start/End: Original strand, 2901137 - 2901271
Alignment:
Q  223 actctaaataccttgtgactgtattgcataaataatcttacaaaacttttaaagaatgagagaatctcaatttggc------aatacctttagtacataa 316  Q
    |||||||||||||||||||| || | |||| | ||||||| | ||||| |||||||| ||||| ||||  ||||||      |||||||||||||||||     
T  2901137 actctaaataccttgtgactttacttcatagacaatcttaaagaacttgtaaagaataagagagtctcgttttggctgtgctaatacctttagtacatag 2901236  T
Q  317 tcagttgctacactttcctgttggcctccagttgc 351  Q
    || ||| | ||||||||||||||||||||||||||    
T  2901237 tctgttaccacactttcctgttggcctccagttgc 2901271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 186
Target Start/End: Complemental strand, 18628643 - 18628506
Alignment:
Q  60 aaaataaagtcaaacagtttttatataagctata--ctgatttgatgagctatcatggagagcttacgaaaagaagctgaaaaca---------gttgat 148  Q
    |||||| |||||||| ||||||||||||| ||||  ||| ||| || || |||| ||||||||||| | ||| ||||||||||||         |||| |    
T  18628643 aaaatatagtcaaactgtttttatataagttataaactgttttcataagttatcttggagagcttatggaaataagctgaaaacaacttcataagttgtt 18628544  T
Q  149 ttcataagctctcccaaacagtctcataagtgtttatg 186  Q
    |||||||||||||||||||||||||| |||||||||||    
T  18628543 ttcataagctctcccaaacagtctcacaagtgtttatg 18628506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 54325173 - 54325104
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    ||||||| |||||| |||||||| |  |||| ||||||||||||||||||| ||||| ||||||||||||    
T  54325173 agtgcttgtgtataaactatttctattacaaaagataaaataaagtcaaactgttttcatataagctata 54325104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 30338727 - 30338659
Alignment:
Q  25 gtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    ||||||||||||| |||||||| | ||||| ||||| |||||||| |||| ||||| ||||||||||||    
T  30338727 gtgcttatgtataaactatttctataacaaaagatagaataaagttaaactgttttcatataagctata 30338659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 7749218 - 7749120
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctatactgatttgatgagctatcatggagagctt 122  Q
    |||| |||||||||| ||||||| | || || ||| |||||||| || |||  ||||||||||| ||| |||||||| || ||||||| ||||||||||    
T  7749218 agtgtttatgtatacgctatttctataataaaagagaaaataaaatcgaactatttttatataaactaaactgatttcataagctatcttggagagctt 7749120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 46013436 - 46013367
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    |||| |||||| || ||||||||   ||||| ||||||||||||||||||| ||||||||||||| ||||    
T  46013436 agtgtttatgtgtaaactatttctggaacaaaagataaaataaagtcaaactgtttttatataagttata 46013367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 43372079 - 43372016
Alignment:
Q  50 aacaacagataaaataaagtcaaacagtttttatataagctat--actgatttgatgagctatc 111  Q
    ||||| |||||||||| |||||||| |||||||||||||||||  |||||||| || |||||||    
T  43372079 aacaaaagataaaatacagtcaaactgtttttatataagctataaactgatttcataagctatc 43372016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 195
Target Start/End: Complemental strand, 19429457 - 19429414
Alignment:
Q  152 ataagctctcccaaacagtctcataagtgtttatgctagtaaat 195  Q
    ||||||||||||||||||||||| |||||||||| | |||||||    
T  19429457 ataagctctcccaaacagtctcacaagtgtttataccagtaaat 19429414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 21953209 - 21953276
Alignment:
Q  26 tgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    |||| ||||||| |||||||| | ||||| ||  |||||||||||||||  |||||||||||||||||    
T  21953209 tgctcatgtataaactatttctataacaaaagggaaaataaagtcaaactctttttatataagctata 21953276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 187
Target Start/End: Original strand, 44320028 - 44320067
Alignment:
Q  148 tttcataagctctcccaaacagtctcataagtgtttatgc 187  Q
    ||||||||||||||||||||||||||| || |||||||||    
T  44320028 tttcataagctctcccaaacagtctcacaattgtttatgc 44320067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 46247152 - 46247215
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataa 87  Q
    |||| |||||| || ||||||||   ||||| ||||||||||||||||||| ||||||||||||    
T  46247152 agtgtttatgtgtaaactatttctggaacaaaagataaaataaagtcaaactgtttttatataa 46247215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 927425 - 927479
Alignment:
Q  39 actatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    |||||||| || |||| |||| |||||||||||||| ||||| ||||||||||||    
T  927425 actatttctaatacaaaagatgaaataaagtcaaactgttttcatataagctata 927479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 18630617 - 18630683
Alignment:
Q  27 gcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    ||||||| ||| |||||||| | ||||| |||||||||||||||||   ||||| ||||||||||||    
T  18630617 gcttatgcataaactatttcaataacaaaagataaaataaagtcaattggttttcatataagctata 18630683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 186
Target Start/End: Original strand, 42461330 - 42461368
Alignment:
Q  148 tttcataagctctcccaaacagtctcataagtgtttatg 186  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  42461330 tttcataagttctcccaaacagtctcataagtgcttatg 42461368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 21593147 - 21593079
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    |||||||||||||| |||||||| | ||| | ||||||||||||||| |||  |||| ||||||||||||    
T  21593147 agtgcttatgtataaactatttctataactaaagataaaataaagtc-aactattttcatataagctata 21593079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 39931408 - 39931371
Alignment:
Q  56 agataaaataaagtcaaacagtttttatataagctata 93  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  39931408 agataaaataaagtcaaacattttttatgtaagctata 39931371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 41606120 - 41606189
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    |||| ||||||| | ||||||| || |||||  |||||||||||||||||  ||| ||||||||||||||    
T  41606120 agtgtttatgtaaaaactattttgataacaaaggataaaataaagtcaaatggttcttatataagctata 41606189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 2996646 - 2996690
Alignment:
Q  142 agttgatttcataagctctcccaaacagtctcataagtgtttatg 186  Q
    ||||| |||||||||||||| |||||||||||| ||||| |||||    
T  2996646 agttgttttcataagctctctcaaacagtctcaaaagtgcttatg 2996690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 19429592 - 19429560
Alignment:
Q  56 agataaaataaagtcaaacagtttttatataag 88  Q
    ||||||||||||||||||| |||||||||||||    
T  19429592 agataaaataaagtcaaactgtttttatataag 19429560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 51560280 - 51560236
Alignment:
Q  148 tttcataagctctcccaaacagtctcataagtgtttatgctagta 192  Q
    ||||||||| ||||||||| ||||||||||||| |||||| ||||    
T  51560280 tttcataaggtctcccaaagagtctcataagtgcttatgccagta 51560236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 29 - 143
Target Start/End: Complemental strand, 28586897 - 28586781
Alignment:
Q  29 ttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata--ctgatttgatgagctatcatggagagcttacga 126  Q
    |||||||||||||||||| | ||||| ||||||||||||||||||| ||||| ||||||  ||||  ||| ||||| |||||||| | |||||||||       
T  28586897 ttatgtatacactatttctataacaaaagataaaataaagtcaaactgttttcatataaattataagctgttttgacgagctatcctagagagcttatcg 28586798  T
Q  127 aaagaagctgaaaacag 143  Q
    ||| |||||||||||||    
T  28586797 aaataagctgaaaacag 28586781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 37063208 - 37063146
Alignment:
Q  26 tgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataag 88  Q
    |||||||||||| |||||||| | ||||| |||||||||||||||||||  |||| |||||||    
T  37063208 tgcttatgtataaactatttctataacaaaagataaaataaagtcaaactattttcatataag 37063146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 14295456 - 14295509
Alignment:
Q  40 ctatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    ||||||| | ||||| ||||||||||||||||||| ||||| ||||||||||||    
T  14295456 ctatttctataacaaaagataaaataaagtcaaactgttttcatataagctata 14295509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 19177413 - 19177482
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    |||||||||||||| |||||||| | ||||  ||||||||| ||||| ||| ||||| ||||||||||||    
T  19177413 agtgcttatgtataaactatttctacaacagaagataaaattaagtctaactgttttcatataagctata 19177482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 7907956 - 7907999
Alignment:
Q  143 gttgatttcataagctctcccaaacagtctcataagtgtttatg 186  Q
    |||| ||||||||| ||| |||||||||||||||||||||||||    
T  7907956 gttgttttcataagttcttccaaacagtctcataagtgtttatg 7907999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 13244548 - 13244505
Alignment:
Q  142 agttgatttcataagctctcccaaacagtctcataagtgtttat 185  Q
    ||||| ||||||||||||| ||||||||| ||||||||||||||    
T  13244548 agttgttttcataagctcttccaaacagtgtcataagtgtttat 13244505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 16889671 - 16889738
Alignment:
Q  26 tgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    ||||||||||||  ||||||| | ||||| ||||||| | ||||||||| ||||||||| ||||||||    
T  16889671 tgcttatgtataagctatttccataacaaaagataaacttaagtcaaactgtttttatagaagctata 16889738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 7096263 - 7096213
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaac 74  Q
    ||||||||||||||  ||||||| | ||||| |||||||||||||||||||    
T  7096263 agtgcttatgtataagctatttctataacaaaagataaaataaagtcaaac 7096213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 10907451 - 10907505
Alignment:
Q  142 agttgatttcataagctctcccaaacagtctcataagtgtttatgctagtaaatt 196  Q
    ||||| ||||||||||||| ||||||||||||| ||||||| |||| | ||||||    
T  10907451 agttgttttcataagctcttccaaacagtctcacaagtgttcatgccaataaatt 10907505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 583877 - 583840
Alignment:
Q  56 agataaaataaagtcaaacagtttttatataagctata 93  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  583877 agataaaataaagtcaaactgttttcatataagctata 583840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 32059693 - 32059656
Alignment:
Q  56 agataaaataaagtcaaacagtttttatataagctata 93  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  32059693 agataaaataaagtcaaactgttttcatataagctata 32059656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 35135798 - 35135729
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    |||| |||||||||   |||||| | ||||| |||||||||||||||||||  |||| ||||||||||||    
T  35135798 agtgtttatgtataagatatttctataacaaaagataaaataaagtcaaactattttcatataagctata 35135729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 29117049 - 29116993
Alignment:
Q  41 tatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctatactga 97  Q
    |||||| | ||||| ||||||||||||||||||| |||||  |||||||||| ||||    
T  29117049 tatttctataacaaaagataaaataaagtcaaactgttttcgtataagctatcctga 29116993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 32172590 - 32172705
Alignment:
Q  27 gcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata--ctgatttgatgagctatcatggagagcttac 124  Q
    ||||||||||| |||||||| | ||||| ||||||||| |||||||   ||||  ||||||||||||  ||| ||| || |||||||||| ||| || |     
T  32172590 gcttatgtataaactatttctacaacaaaagataaaatgaagtcaagttgtttacatataagctataagctgttttcataagctatcatgaagaactaat 32172689  T
Q  125 gaaaagaagctgaaaa 140  Q
    | ||| ||||||||||    
T  32172690 ggaaataagctgaaaa 32172705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 7918778 - 7918728
Alignment:
Q  142 agttgatttcataagctctcccaaacagtctcataagtgtttatgctagta 192  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  7918778 agttgttttcataagctctcccaaacagtctcacaagtgtttatgctagta 7918728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 1664450 - 1664492
Alignment:
Q  150 tcataagctctcccaaacagtctcataagtgtttatgctagta 192  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  1664450 tcataagctctcccaaacagtctcacaagtgtttatgctagta 1664492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 14482136 - 14482185
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaa 73  Q
    |||||||||||||| |||||||| | ||||| ||||||||||||||||||    
T  14482136 agtgcttatgtataaactatttctataacaaaagataaaataaagtcaaa 14482185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 38036248 - 38036128
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata--ctgatttgatgagctatcatggagagct 121  Q
    |||||||||||||| |||||||    ||||| | |||||||||| |||||  |||||| | |||||||||  ||| |||||| ||||||| |||||||||    
T  38036248 agtgcttatgtataaactatttatttaacaaaaaataaaataaattcaaattgtttttgtgtaagctataaactgttttgattagctatcttggagagct 38036149  T
Q  122 tacgaaaagaagctgaaaaca 142  Q
    ||   ||| ||||||||||||    
T  38036148 tattgaaataagctgaaaaca 38036128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 9700076 - 9700124
Alignment:
Q  144 ttgatttcataagctctcccaaacagtctcataagtgtttatgctagta 192  Q
    ||||||||| |||||||| |||| ||||||| |||||||||||||||||    
T  9700076 ttgatttcacaagctctctcaaatagtctcacaagtgtttatgctagta 9700124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 11795064 - 11795147
Alignment:
Q  62 aataaagtcaaacagtttttatataagctata--ctgatttgatgagctatcatggagagcttacgaaaagaagctgaaaacag 143  Q
    |||||||||| || ||||| ||||||| ||||  ||||||| || |||||| |||||||||||| | ||| |||||||||||||    
T  11795064 aataaagtcacactgttttcatataagttataagctgatttcataagctattatggagagcttatggaaataagctgaaaacag 11795147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 1889124 - 1889082
Alignment:
Q  150 tcataagctctcccaaacagtctcataagtgtttatgctagta 192  Q
    ||||||||| ||||||||||||||| |||||||||||| ||||    
T  1889124 tcataagctttcccaaacagtctcaaaagtgtttatgccagta 1889082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 6509407 - 6509338
Alignment:
Q  56 agataaaataaagtcaaacagtttttatataagctata--ctgatttgatgagctatcatggagagctta 123  Q
    ||||||||||||||||||  || |||||||||||||||  ||| ||| || ||||||| |||||||||||    
T  6509407 agataaaataaagtcaaattgtatttatataagctataagctgttttcataagctatcctggagagctta 6509338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 143
Target Start/End: Original strand, 11183495 - 11183600
Alignment:
Q  40 ctatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata--ctgatttgatgagctatcatggagagcttacgaaaagaagctga 137  Q
    ||||||| |||||||||||||||| |||||||||| ||  | |||| |||||||  ||| ||| |  ||||| | ||||||||||| | ||| |||||||    
T  11183495 ctatttctaaaacaacagataaaacaaagtcaaactgtcctcatattagctataagctgttttcacaagctaccctggagagcttatggaaataagctga 11183594  T
Q  138 aaacag 143  Q
    ||||||    
T  11183595 aaacag 11183600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 42215081 - 42215035
Alignment:
Q  148 tttcataagctctcccaaacagtctcataagtgtttatgctagtaaa 194  Q
    ||||||||| ||||||||||||| ||| ||||| |||||||||||||    
T  42215081 tttcataagttctcccaaacagtgtcacaagtgcttatgctagtaaa 42215035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 24326113 - 24326154
Alignment:
Q  151 cataagctctcccaaacagtctcataagtgtttatgctagta 192  Q
    |||||||||||||||||||||||| ||||| |||||| ||||    
T  24326113 cataagctctcccaaacagtctcacaagtgcttatgccagta 24326154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 34770826 - 34770895
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    |||||||||||| | |||||||| |  |||| ||||||||||||||||||  ||||| || |||||||||    
T  34770826 agtgcttatgtaaaaactatttccattacaaaagataaaataaagtcaaattgttttcatttaagctata 34770895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 35298614 - 35298490
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttt-tatataagctata--ctgatttgatgagctatcatggagagc 120  Q
    ||||||||||||||  |||||||   ||||| ||||||||||||| |||||||||||  |||||| |||||   || ||| || ||||||||||| ||||    
T  35298614 agtgcttatgtataagctatttcagtaacaaaagataaaataaagccaaacagttttcaatataaactataagttgttttcataagctatcatggtgagc 35298515  T
Q  121 ttacgaaaagaagctgaaaacagtt 145  Q
     |||  ||| |||||||||| ||||    
T  35298514 ctacataaataagctgaaaatagtt 35298490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 2488005 - 2487961
Alignment:
Q  142 agttgatttcataagctctcccaaacagtctcataagtgtttatg 186  Q
    ||||| ||||||||| ||||||||||||||||| ||||| |||||    
T  2488005 agttgttttcataagttctcccaaacagtctcacaagtgcttatg 2487961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 4763869 - 4763921
Alignment:
Q  41 tatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    |||||||| ||||| |||||||||||| |||||| ||||| | ||||||||||    
T  4763869 tatttcgacaacaaaagataaaataaattcaaaccgttttcacataagctata 4763921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 16162839 - 16162883
Alignment:
Q  148 tttcataagctctcccaaacagtctcataagtgtttatgctagta 192  Q
    ||||||||| | || |||||||||||| |||||||||||||||||    
T  16162839 tttcataagttttctcaaacagtctcacaagtgtttatgctagta 16162883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 29169927 - 29169883
Alignment:
Q  148 tttcataagctctcccaaacagtctcataagtgtttatgctagta 192  Q
    ||||||||||||||||||||| | ||| ||||| |||||||||||    
T  29169927 tttcataagctctcccaaacaatttcacaagtgcttatgctagta 29169883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 39392791 - 39392747
Alignment:
Q  30 tatgtatacactatttcgaaaacaacagataaaataaagtcaaac 74  Q
    |||||||| |||||||| | ||||| |||||||||||||||||||    
T  39392791 tatgtataaactatttctataacaaaagataaaataaagtcaaac 39392747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 43393759 - 43393719
Alignment:
Q  152 ataagctctcccaaacagtctcataagtgtttatgctagta 192  Q
    ||||||||||||||||||||||| |||||||| ||| ||||    
T  43393759 ataagctctcccaaacagtctcaaaagtgtttttgcaagta 43393719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 20113 - 20181
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctat 92  Q
    |||||||||||||| |||||||| | ||| | ||||||||||||||||||||||| | |||||||||||    
T  20113 agtgcttatgtatatactatttctataaccaaagataaaataaagtcaaacagttatcatataagctat 20181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 6891 - 6933
Alignment:
Q  150 tcataagctctcccaaacagtctcataagtgtttatgctagta 192  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  6891 tcataagctctcccaaacagtctcacaagtgtttatgctagta 6933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 32386699 - 32386579
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctatac--tgatttgatgagctatcatggagagct 121  Q
    |||||||||||||| ||||||||   || || ||||||||||| ||||||  ||||| ||||||| |||||  || ||| || || |||| |||||||||    
T  32386699 agtgcttatgtatagactatttcactaagaaaagataaaataaggtcaaattgttttcatataaggtatacgttgttttcattagttatcctggagagct 32386600  T
Q  122 tacgaaaagaagctgaaaaca 142  Q
    || ||||| ||||||||||||    
T  32386599 tatgaaaataagctgaaaaca 32386579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 32917270 - 32917320
Alignment:
Q  142 agttgatttcataagctctcccaaacagtctcataagtgtttatgctagta 192  Q
    ||||| || |||||||||||||||||||||||| |||||||||| ||||||    
T  32917270 agttgtttccataagctctcccaaacagtctcacaagtgtttattctagta 32917320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 5550066 - 5550135
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    |||||||||||||| | |||||||| || || |||||| |||||||||||  ||||| ||||||||||||    
T  5550066 agtgcttatgtatatagtatttcgataataagagataacataaagtcaaattgttttcatataagctata 5550135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 2456886 - 2456933
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaa 72  Q
    |||||||||||||| |||||||||| ||||| |||||||||||||||||    
T  2456886 agtgcttatgtataaactatttcgataacaa-agataaaataaagtcaa 2456933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 29274363 - 29274296
Alignment:
Q  26 tgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    ||||||||||||  ||||||| | | ||| ||||||||||||||||||  ||||| ||||||||||||    
T  29274363 tgcttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagctata 29274296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 4308642 - 4308712
Alignment:
Q  142 agttgatttcataagctctcccaaacagtctcataagtgtttatgctagtaaattaattaatataagtcaa 212  Q
    ||||| ||||||||| ||||||||||||| |||  |||| |||||| |||||||||| | | |||||||||    
T  4308642 agttgttttcataagttctcccaaacagtgtcactagtgcttatgccagtaaattaactcaaataagtcaa 4308712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 507153 - 507222
Alignment:
Q  23 tagtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctat 92  Q
    ||||||||||||||| | |||||| | ||||| |||||||||||||| | |  |||||| ||||||||||    
T  507153 tagtgcttatgtataaattatttctataacaaaagataaaataaagttagattgtttttgtataagctat 507222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 2514636 - 2514705
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    ||||||||||||||  ||||||| | || || |||||||||||||||||||   |||||||| |||||||    
T  2514636 agtgcttatgtataagctatttctataataaaagataaaataaagtcaaactaattttatatgagctata 2514705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 4006648 - 4006717
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    |||||||||| |||   |||||| | |||||  |||||||||||||||||  ||||||||||||||||||    
T  4006648 agtgcttatgcataagatatttctataacaaatgataaaataaagtcaaattgtttttatataagctata 4006717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 10452496 - 10452427
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    ||||||||||||||  ||||||| | ||||| | |||||||||| ||||||  |||| ||||||||||||    
T  10452496 agtgcttatgtataagctatttctataacaaaatataaaataaaatcaaactattttcatataagctata 10452427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 24774692 - 24774749
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagttttt 81  Q
    ||||||||| |||| |||||||| | ||||| | ||||||||||||||||| ||||||    
T  24774692 agtgcttatatataaactatttctataacaaaatataaaataaagtcaaactgttttt 24774749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 836534 - 836498
Alignment:
Q  142 agttgatttcataagctctcccaaacagtctcataag 178  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  836534 agttgttttcataagttctcccaaacagtctcataag 836498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 9326923 - 9326959
Alignment:
Q  57 gataaaataaagtcaaacagtttttatataagctata 93  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  9326923 gatataataaagtcaaactgtttttatataagctata 9326959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 10353752 - 10353708
Alignment:
Q  148 tttcataagctctcccaaacagtctcataagtgtttatgctagta 192  Q
    ||||| ||||||||||||||||||||| ||||| ||||| |||||    
T  10353752 tttcacaagctctcccaaacagtctcacaagtgcttatgttagta 10353708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 27857431 - 27857475
Alignment:
Q  142 agttgatttcataagctctcccaaacagtctcataagtgtttatg 186  Q
    ||||| ||||||||||||||||||||||| ||| |||||| ||||    
T  27857431 agttgttttcataagctctcccaaacagtttcacaagtgtctatg 27857475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 20192742 - 20192673
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    ||||||||||||||  ||||||  | ||||| ||||||||||||||||||||||||| |||||| |||||    
T  20192742 agtgcttatgtataagctatttatataacaaaagataaaataaagtcaaacagttttcatataatctata 20192673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 145
Target Start/End: Complemental strand, 24887403 - 24887296
Alignment:
Q  40 ctatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata--ctgatttgatgagctatcatggagagcttacgaaaagaagctga 137  Q
    ||||||| | ||||| ||||||||||||||||||| || || |||||||||| |  ||| ||| || ||||||| ||||||||||| |  || |||||||    
T  24887403 ctatttctataacaatagataaaataaagtcaaactgtattcatataagctaaaagctgttttcataagctatcctggagagcttatgggaataagctga 24887304  T
Q  138 aaacagtt 145  Q
    ||||||||    
T  24887303 aaacagtt 24887296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 27792806 - 27792872
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagct 90  Q
    ||||||||||||||  ||||||| ||||||| ||||||||||| |||||||  |||| |||||||||    
T  27792806 agtgcttatgtataagctatttcaaaaacaaaagataaaataaggtcaaactattttcatataagct 27792872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 45590732 - 45590774
Alignment:
Q  150 tcataagctctcccaaacagtctcataagtgtttatgctagta 192  Q
    ||||||||||||||||||||||||| ||||| |||||||||||    
T  45590732 tcataagctctcccaaacagtctcacaagtgcttatgctagta 45590774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 142
Target Start/End: Original strand, 23785221 - 23785309
Alignment:
Q  56 agataaaataaagtcaaacagtttttatataagctat--actgatttgatgagctatcatggagagcttacgaaaagaagctgaaaaca 142  Q
    ||||||||||||||||||| || || |||||||||||  |||| ||| |  |||| |||||||||||||| | ||| ||||||||||||    
T  23785221 agataaaataaagtcaaactgtattcatataagctataaactgttttcacaagctctcatggagagcttatggaaacaagctgaaaaca 23785309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 31337513 - 31337468
Alignment:
Q  48 aaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    ||||||| ||||||||||||||||||| ||||||||||||| ||||    
T  31337513 aaaacaaaagataaaataaagtcaaactgtttttatataagttata 31337468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 49587036 - 49586984
Alignment:
Q  40 ctatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctat 92  Q
    ||||||| | ||||| ||||||||||||||||||| ||||| |||||||||||    
T  49587036 ctatttctataacaaaagataaaataaagtcaaactgttttcatataagctat 49586984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 143
Target Start/End: Original strand, 34954032 - 34954137
Alignment:
Q  39 actatttcgaaaacaacagataaaataaagtcaaacagtttttatataagct--atactgatttgatgagctatcatggagagcttacgaaaagaagctg 136  Q
    |||||||| | ||||  ||||||||||||||||| | ||||| |||||| ||  |||||| ||| || | |||||||||| |||||| ||||| ||||||    
T  34954032 actatttctataacacaagataaaataaagtcaagctgttttcatataatctgtatactgtttt-ataacctatcatggatagcttatgaaaataagctg 34954130  T
Q  137 aaaacag 143  Q
    |||||||    
T  34954131 aaaacag 34954137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 143
Target Start/End: Original strand, 1816549 - 1816638
Alignment:
Q  56 agataaaataaagtcaaacagtttttatataagctata--ctgatttgatgagctatcatggagagcttacgaaaagaagctgaaaacag 143  Q
    ||||||||||||||||||| |||||| |||||| ||||   || ||| || ||||||  |||||||||||  |||| |||||||||||||    
T  1816549 agataaaataaagtcaaactgtttttgtataagatataagttgttttcataagctatactggagagcttatcaaaataagctgaaaacag 1816638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 37273207 - 37273260
Alignment:
Q  142 agttgatttcataagctctcccaaacagtctcataagtgtttatgctagtaaat 195  Q
    ||||| || ||||||||||||||||||||||||  |||| |||||||| |||||    
T  37273207 agttgtttccataagctctcccaaacagtctcaccagtgcttatgctaataaat 37273260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 40122884 - 40122820
Alignment:
Q  28 cttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    ||||||||||  ||||||| | ||||| ||||||||||||||||||| ||||| ||| ||||||||    
T  40122884 cttatgtataagctatttcaataacaaaagataaaataaagtcaaactgttttcata-aagctata 40122820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 49772665 - 49772616
Alignment:
Q  142 agttgatttcataagctctcccaaacagtctcataagtgtttatgctagt 191  Q
    ||||| || |||||||||||| |||||||||||  |||||||||||||||    
T  49772665 agttgtttccataagctctcctaaacagtctcactagtgtttatgctagt 49772616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 1395605 - 1395673
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctat 92  Q
    ||||| ||||||||  ||||||| | ||||| ||||||||||||||||||   |||| |||||||||||    
T  1395605 agtgcatatgtataagctatttctataacaaaagataaaataaagtcaaattattttcatataagctat 1395673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 2201094 - 2201185
Alignment:
Q  56 agataaaataaagtcaaacagtttttatataagctata--ctgatttgatgagctatcatggagagcttacgaaaagaagctgaaaacagtt 145  Q
    |||||||| |||||||||| ||||| ||||||||||||  ||| ||| || ||||||| |||| || ||| | ||| |||||||||| ||||    
T  2201094 agataaaacaaagtcaaactgttttcatataagctataagctgttttcattagctatcttggatagtttaaggaaaaaagctgaaaagagtt 2201185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 21574563 - 21574595
Alignment:
Q  142 agttgatttcataagctctcccaaacagtctca 174  Q
    ||||| |||||||||||||||||||||||||||    
T  21574563 agttgttttcataagctctcccaaacagtctca 21574595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 41028987 - 41028919
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctat 92  Q
    ||||||||||||||  ||||||| | ||||| ||| ||||||||||||| | ||||| | |||||||||    
T  41028987 agtgcttatgtataagctatttctataacaaaagaaaaaataaagtcaatctgttttcaaataagctat 41028919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 44014789 - 44014745
Alignment:
Q  148 tttcataagctctcccaaacagtctcataagtgtttatgctagta 192  Q
    ||||||||| | || |||||||||||| |||||||||||||||||    
T  44014789 tttcataagttttctcaaacagtctcacaagtgtttatgctagta 44014745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 46759126 - 46759059
Alignment:
Q  120 cttacgaaaagaagctgaaaac--agttgatttcataagctctcccaaacagtctcataagtgtttat 185  Q
    |||| ||||| |||||||||||  ||||| || |||||||||||| ||||||||||| ||||| ||||    
T  46759126 cttatgaaaataagctgaaaacggagttgcttccataagctctcctaaacagtctcacaagtgcttat 46759059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 10143106 - 10143175
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    ||||||||||||||   |||||| | ||||| ||||||||| ||||||||| ||||||||||||||||||    
T  10143106 agtgcttatgtataagttatttctataacaaaagataaaattaagtcaaactgtttttatataagctata 10143175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 195
Target Start/End: Original strand, 757532 - 757575
Alignment:
Q  152 ataagctctcccaaacagtctcataagtgtttatgctagtaaat 195  Q
    |||||| ||||||||||||||||||||| |||||||||||||||    
T  757532 ataagccctcccaaacagtctcataagtatttatgctagtaaat 757575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 13866825 - 13866892
Alignment:
Q  26 tgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    |||||||||||| |||||||| | | ||| ||||||||| ||||||||| |||||||||||| |||||    
T  13866825 tgcttatgtataaactatttctatagcaaaagataaaattaagtcaaactgtttttatataatctata 13866892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 37053528 - 37053597
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    |||||||||||||| |||||||| | ||||  | ||||||||||||||||| ||||| ||||||| ||||    
T  37053528 agtgcttatgtatagactatttctataacagaaaataaaataaagtcaaactgttttcatataagttata 37053597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 41905913 - 41905840
Alignment:
Q  142 agttgatttcataagctctcccaaacagtctcataagtgtttatgctagtaaattaattaatataagtcaaatc 215  Q
    ||||| |||||||||||||| | || |||||||||||||||||||| | ||||| | || | ||||||||||||    
T  41905913 agttgttttcataagctctctcgaagagtctcataagtgtttatgcaaataaataagttcaaataagtcaaatc 41905840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 36863729 - 36863654
Alignment:
Q  56 agataaaataaagtcaaacagtttttatataagctat--actgatttgatgagctatcatggagagcttacgaaaa 129  Q
    |||||||||||||||||||| |||||||||||| |||  | || ||| || ||||||| ||||||||||| |||||    
T  36863729 agataaaataaagtcaaacaatttttatataagttataaattgttttcataagctatcttggagagcttatgaaaa 36863654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 5133708 - 5133775
Alignment:
Q  26 tgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    ||||||||||||  ||||||| | ||||| |||||||||||||  |||| ||||||||||||| ||||    
T  5133708 tgcttatgtataagctatttctataacaaaagataaaataaagataaactgtttttatataagatata 5133775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 28803642 - 28803575
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagcta 91  Q
    ||||||||| ||||   |||||||| ||||| ||||||||||||||||||| | ||| ||||||||||    
T  28803642 agtgcttatatataagttatttcgataacaaaagataaaataaagtcaaactgatttcatataagcta 28803575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 12215741 - 12215787
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtc 70  Q
    |||||||||||||| |||||||| | ||||| |||||||||||||||    
T  12215741 agtgcttatgtataaactatttctacaacaaaagataaaataaagtc 12215787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 18962174 - 18962077
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctat--actgatttgatgagctatcatggagag 119  Q
    |||||||||||||   ||||||  | ||||| |||||||||||||| |||| ||||| |||||||||||  |||  ||| || |||||||||||||||    
T  18962174 agtgcttatgtattagctatttttataacaaaagataaaataaagttaaactgttttcatataagctataaactattttcataagctatcatggagag 18962077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 186
Target Start/End: Original strand, 37474844 - 37474882
Alignment:
Q  148 tttcataagctctcccaaacagtctcataagtgtttatg 186  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  37474844 tttcataagctctctcaaagagtctcataagtgtttatg 37474882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 7103587 - 7103550
Alignment:
Q  56 agataaaataaagtcaaacagtttttatataagctata 93  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  7103587 agataaaataaagtcaaactgttttaatataagctata 7103550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 11513858 - 11513950
Alignment:
Q  50 aacaacagataaaataaagtcaaacagtttttatataagctata--ctgatttgatgagctatcatggagagcttacgaaaagaagctgaaaa 140  Q
    ||||| ||||||||||||||||||  ||||| ||||||||||||   || ||| || |||||||||||||| |||  | ||| ||||||||||    
T  11513858 aacaaaagataaaataaagtcaaattgttttcatataagctataagttgttttcataagctatcatggagaacttttggaaataagctgaaaa 11513950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 33192127 - 33192196
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    ||||||||| || | |||||||| | ||||  ||||||||||||||||||| ||||| ||||||| ||||    
T  33192127 agtgcttatataaaaactatttctataacataagataaaataaagtcaaactgttttcatataagttata 33192196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 10190342 - 10190382
Alignment:
Q  145 tgatttcataagctctcccaaacagtctcataagtgtttat 185  Q
    ||||| ||||||||||| |||||||||| ||||||||||||    
T  10190342 tgattccataagctctctcaaacagtcttataagtgtttat 10190382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 11513975 - 11514019
Alignment:
Q  148 tttcataagctctcccaaacagtctcataagtgtttatgctagta 192  Q
    ||||||||||||||  ||||||||||| ||||| |||||||||||    
T  11513975 tttcataagctctctaaaacagtctcacaagtgcttatgctagta 11514019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 14209227 - 14209279
Alignment:
Q  40 ctatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctat 92  Q
    ||||||| | ||||| |||||||||||| |||||| ||||| |||||||||||    
T  14209227 ctatttcaataacaaaagataaaataaattcaaactgttttcatataagctat 14209279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 17952834 - 17952770
Alignment:
Q  27 gcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagcta 91  Q
    |||||| ||||  ||||||| | ||||| |||||||||||||||||||  |||| ||||||||||    
T  17952834 gcttatatataagctatttctataacaaaagataaaataaagtcaaactattttcatataagcta 17952770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 142
Target Start/End: Complemental strand, 36415776 - 36415689
Alignment:
Q  57 gataaaataaagtcaaacagtttttatataagctata--ctgatttgatgagctatcatggagagcttacgaaaagaagctgaaaaca 142  Q
    ||||||||||||||||||| |||| ||  | ||||||  ||| ||| || |||||||||| ||| |||||||||| ||| ||||||||    
T  36415776 gataaaataaagtcaaacatttttcattgatgctataagctgttttcataagctatcatgtagaacttacgaaaataagatgaaaaca 36415689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 7243578 - 7243642
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataag 88  Q
    ||||||| ||| ||||||||||  | ||||| ||||||||||| |||||||||||||||||||||    
T  7243578 agtgcttgtgtttacactatttttataacaaaagataaaataacgtcaaacagtttttatataag 7243642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 23214928 - 23214978
Alignment:
Q  142 agttgatttcataagctctcccaaacagtctcataagtgtttatgctagta 192  Q
    ||||| ||||||||  |||| ||||||||||||||||||||||||||||||    
T  23214928 agttgttttcataaattctctcaaacagtctcataagtgtttatgctagta 23214978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 28165025 - 28165146
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctat--actgatttgatgagctatcatggagagct 121  Q
    ||||||||||||||   | |||| | ||||| ||||||||| ||||||||  ||||| |||||||||||  ||||  || || |||||||||||||||||    
T  28165025 agtgcttatgtataagttctttctataacaaaagataaaatgaagtcaaattgttttaatataagctataaactgtctttataagctatcatggagagct 28165124  T
Q  122 tacgaaaagaagctgaaaacag 143  Q
    || | ||| ||| |||||||||    
T  28165125 tatggaaataagttgaaaacag 28165146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 22387893 - 22387840
Alignment:
Q  142 agttgatttcataagctctcccaaacagtctcataagtgtttatgctagtaaat 195  Q
    ||||| ||||||||||||||||||||||||||| | |||||||||  |||||||    
T  22387893 agttgttttcataagctctcccaaacagtctcacacgtgtttatgtcagtaaat 22387840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 31002695 - 31002764
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    |||||||||||||| |||||||| |  |||| ||||||||||||||||||   |||| ||||||||||||    
T  31002695 agtgcttatgtataaactatttcaaccacaaaagataaaataaagtcaaaatattttcatataagctata 31002764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 5288195 - 5288239
Alignment:
Q  153 taagctctcccaaacagtctcataagtgtttatgctagtaaatta 197  Q
    |||| ||||||||||||||||||||||| ||||||||||| ||||    
T  5288195 taagttctcccaaacagtctcataagtgcttatgctagtagatta 5288239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 2176846 - 2176893
Alignment:
Q  27 gcttatgtatacactatttcgaaaacaacagataaaataaagtcaaac 74  Q
    ||||||||||||||||||||   ||||| |||||||||||||||||||    
T  2176846 gcttatgtatacactatttcagtaacaaaagataaaataaagtcaaac 2176893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 195
Target Start/End: Complemental strand, 10079326 - 10079283
Alignment:
Q  152 ataagctctcccaaacagtctcataagtgtttatgctagtaaat 195  Q
    |||||||||||||||||  |||||||||||||||||| ||||||    
T  10079326 ataagctctcccaaacaacctcataagtgtttatgctcgtaaat 10079283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 5373159 - 5373228
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagt-caaacagtttttatataagctata 93  Q
    ||||||||||||||  ||||||| | ||||| |||||||||||||| |||||| |||||||||||| ||||    
T  5373159 agtgcttatgtatatgctatttctataacaaaagataaaataaagtccaaaca-tttttatataagttata 5373228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 30535636 - 30535706
Alignment:
Q  142 agttgatttcataagctctcccaaacagtctcataagtgtttatgctagtaaattaattaatataagtcaa 212  Q
    ||||| ||||||||| ||||| ||||||||||  |||||||||||  |||||||||| | | |||||||||    
T  30535636 agttgttttcataagttctccaaaacagtctctcaagtgtttatgtcagtaaattaactcaaataagtcaa 30535706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 31341130 - 31341192
Alignment:
Q  26 tgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataag 88  Q
    ||||||||||||  ||||||  | ||||| ||||||||||||||||||| | |||||||||||    
T  31341130 tgcttatgtataagctatttgtataacaaaagataaaataaagtcaaactggttttatataag 31341192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 33894557 - 33894622
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagct 90  Q
    ||||||||||||||  ||||||| | ||||| ||||||||| ||||||||| ||||| |||||||||    
T  33894557 agtgcttatgtataagctatttctataacaaaagataaaat-aagtcaaactgttttcatataagct 33894622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 3610876 - 3610807
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    ||||||||||||||  ||||||| | ||||| ||||||||| ||| ||||| |||||  |||||||||||    
T  3610876 agtgcttatgtataagctatttctacaacaaaagataaaatgaaggcaaactgttttggtataagctata 3610807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 9527226 - 9527157
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    ||||||||| ||||| |||| || | ||||| ||||| ||||||||||||| ||||| |||||| |||||    
T  9527226 agtgcttatatatacgctatatctataacaaaagatataataaagtcaaactgttttcatataaactata 9527157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 30456570 - 30456517
Alignment:
Q  40 ctatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    ||||||| ||||||| ||||||||||||||||||  ||||| ||||||| ||||    
T  30456570 ctatttctaaaacaaaagataaaataaagtcaaattgttttcatataagttata 30456517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 31338474 - 31338511
Alignment:
Q  56 agataaaataaagtcaaacagtttttatataagctata 93  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  31338474 agataaaataaagtcaaactgtttttatataagttata 31338511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 1417203 - 1417263
Alignment:
Q  29 ttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagc 89  Q
    ||||||||| |||||||  | ||||| ||||||||||||||||||  ||||| ||||||||    
T  1417203 ttatgtataaactatttatataacaaaagataaaataaagtcaaattgttttcatataagc 1417263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 24975838 - 24975906
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctat 92  Q
    |||||| |||||||  ||| ||| | ||||| ||||||||||||| | ||| |||||||||||||||||    
T  24975838 agtgctgatgtataatctacttctataacaaaagataaaataaaggcgaactgtttttatataagctat 24975906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 46531499 - 46531531
Alignment:
Q  56 agataaaataaagtcaaacagtttttatataag 88  Q
    ||||||||||||||||||| |||||||||||||    
T  46531499 agataaaataaagtcaaactgtttttatataag 46531531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 49060479 - 49060543
Alignment:
Q  29 ttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    |||||||||  ||||||| | ||||| | ||||||||||||||||   |||||||||||||||||    
T  49060479 ttatgtataagctatttctataacaaaaaataaaataaagtcaaattatttttatataagctata 49060543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 49282590 - 49282548
Alignment:
Q  148 tttcataagctctcccaaacagtctcataagtgtttatgctag 190  Q
    ||||||||||| ||||||||||||||||||||| |||||||||    
T  49282590 tttcataagctttcccaaacagtctcataagtgcttatgctag 49282548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 15360845 - 15360897
Alignment:
Q  41 tatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    |||||| | ||||| ||||||||||||||||||| ||||| ||||||||||||    
T  15360845 tatttctataacaaaagataaaataaagtcaaactgttttcatataagctata 15360897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 52190146 - 52190182
Alignment:
Q  105 agctatcatggagagcttacgaaaagaagctgaaaac 141  Q
    ||||||||||||||||||||||||| |||||||||||    
T  52190146 agctatcatggagagcttacgaaaataagctgaaaac 52190182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 4363767 - 4363699
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    ||||||||||||||| ||||||  | ||||| |||| |||||| ||||||| ||||| ||||||||||||    
T  4363767 agtgcttatgtatactctatttt-ataacaaaagattaaataatgtcaaactgttttcatataagctata 4363699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 142
Target Start/End: Original strand, 4548687 - 4548775
Alignment:
Q  56 agataaaataaagtcaaacagtttttatataagctata--ctgatttgatgagctatcatggagagcttacgaaaagaagctgaaaaca 142  Q
    ||||||||||||||||||| ||||||||| |||  |||  ||| ||| || ||||||| ||||||||||  ||||| ||||| ||||||    
T  4548687 agataaaataaagtcaaactgtttttatacaagtcataagctgttttcataagctatcttggagagcttcagaaaataagctaaaaaca 4548775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 17420141 - 17420206
Alignment:
Q  28 cttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    |||||||||| |||||||  | || || ||||||||||||||| |||| |||| ||||||||||||    
T  17420141 cttatgtataaactatttttataagaaaagataaaataaagtcgaacaattttcatataagctata 17420206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 28467515 - 28467576
Alignment:
Q  151 cataagctctcccaaacagtctcataagtgtttatgctagtaaattaattaatataagtcaa 212  Q
    ||||| |||||||||| ||||||||||||| | |||||||||||| || | | |||||||||    
T  28467515 cataatctctcccaaatagtctcataagtgctaatgctagtaaataaactcaaataagtcaa 28467576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 31517737 - 31517684
Alignment:
Q  142 agttgatttcataagctctcccaaacagtctcataagtgtttatgctagtaaat 195  Q
    ||||| ||| ||||| ||||||||||||||||| ||||| |||||| |||||||    
T  31517737 agttgttttgataagttctcccaaacagtctcacaagtgcttatgccagtaaat 31517684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 32515429 - 32515388
Alignment:
Q  151 cataagctctcccaaacagtctcataagtgtttatgctagta 192  Q
    |||||||||||||||||||||||| ||||| ||||| |||||    
T  32515429 cataagctctcccaaacagtctcacaagtgcttatgttagta 32515388  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 40833939 - 40833902
Alignment:
Q  56 agataaaataaagtcaaacagtttttatataagctata 93  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  40833939 agataaaataaaatcaaactgtttttatataagctata 40833902  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 44422778 - 44422815
Alignment:
Q  148 tttcataagctctcccaaacagtctcataagtgtttat 185  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  44422778 tttcataagctctcccagacagtctcaaaagtgtttat 44422815  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 45999424 - 45999355
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    |||||| |||||||  ||||||| | ||||| |||||| |||||||||||| | ||| ||||||||||||    
T  45999424 agtgctcatgtataagctatttctataacaaaagataagataaagtcaaactgctttcatataagctata 45999355  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 4034008 - 4033964
Alignment:
Q  148 tttcataagctctcccaaacagtctcataagtgtttatgctagta 192  Q
    |||||||||||||| |||||| ||||| |||||||||||| ||||    
T  4034008 tttcataagctctctcaaacaatctcacaagtgtttatgccagta 4033964  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 7472328 - 7472368
Alignment:
Q  105 agctatcatggagagcttacgaaaagaagctgaaaacagtt 145  Q
    ||||||| ||||||||||| ||||| |||||||||||||||    
T  7472328 agctatcttggagagcttatgaaaataagctgaaaacagtt 7472368  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 15565963 - 15565899
Alignment:
Q  29 ttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    ||||||||| | |||||| ||| ||| |||||||||||||||||||  ||||| ||||| |||||    
T  15565963 ttatgtatataatatttccaaagcaaaagataaaataaagtcaaactatttttgtataaactata 15565899  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 17420276 - 17420328
Alignment:
Q  142 agttgatttcataagctctcccaaacagtctcataagtgtttatgctagtaaa 194  Q
    ||||| ||||||||||||| | ||||||||| | |||||||||||||| ||||    
T  17420276 agttgttttcataagctcttcaaaacagtctaacaagtgtttatgctaataaa 17420328  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 28788641 - 28788605
Alignment:
Q  57 gataaaataaagtcaaacagtttttatataagctata 93  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  28788641 gataaaataaagtcaaactgttttcatataagctata 28788605  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 38170681 - 38170637
Alignment:
Q  148 tttcataagctctcccaaacagtctcataagtgtttatgctagta 192  Q
    |||||||||||||||||| |||||||| ||||||| |||| ||||    
T  38170681 tttcataagctctcccaagcagtctcacaagtgttcatgccagta 38170637  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 43371882 - 43371838
Alignment:
Q  148 tttcataagctctcccaaacagtctcataagtgtttatgctagta 192  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||    
T  43371882 tttcataagctctctcaaacagtctcacaagtgcttatgccagta 43371838  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 52286629 - 52286681
Alignment:
Q  41 tatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 93  Q
    |||||| | ||||| |||||||||||||| ||||| |||| ||||||||||||    
T  52286629 tatttctacaacaaaagataaaataaagttaaacaattttcatataagctata 52286681  T

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Target: scaffold0590 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 1210 - 1160
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaac 74  Q
    ||||||||||||||  ||||||| | ||||| |||||||||||||||||||    
T  1210 agtgcttatgtataagctatttctataacaaaagataaaataaagtcaaac 1160  T

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Target: scaffold0275 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 2765 - 2815
Alignment:
Q  24 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaac 74  Q
    ||||||||||||||  ||||||| | ||||| |||||||||||||||||||    
T  2765 agtgcttatgtataagctatttctataacaaaagataaaataaagtcaaac 2815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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