View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15720_high_17 (Length: 319)

Name: NF15720_high_17
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15720_high_17
NF15720_high_17
[»] chr7 (14 HSPs)
chr7 (140-304)||(35363549-35363713)
chr7 (11-116)||(35363289-35363394)
chr7 (40-116)||(35207400-35207476)
chr7 (39-116)||(19318373-19318450)
chr7 (40-116)||(35207178-35207254)
chr7 (40-116)||(25048249-25048325)
chr7 (41-115)||(3740644-3740718)
chr7 (38-100)||(19318460-19318522)
chr7 (49-116)||(6408479-6408547)
chr7 (40-116)||(19318147-19318223)
chr7 (49-100)||(39983878-39983929)
chr7 (40-114)||(2834426-2834500)
chr7 (39-93)||(26903431-26903484)
chr7 (78-116)||(39983779-39983817)
[»] chr8 (16 HSPs)
chr8 (40-112)||(14999171-14999243)
chr8 (38-116)||(15009083-15009161)
chr8 (36-116)||(8489369-8489449)
chr8 (39-116)||(43801696-43801773)
chr8 (39-116)||(16324843-16324920)
chr8 (40-116)||(6911029-6911105)
chr8 (38-97)||(14999419-14999478)
chr8 (38-116)||(43801468-43801546)
chr8 (40-113)||(41403988-41404061)
chr8 (41-116)||(41403760-41403835)
chr8 (73-116)||(6911254-6911297)
chr8 (40-113)||(9133900-9133974)
chr8 (73-119)||(22781274-22781320)
chr8 (40-113)||(9134249-9134323)
chr8 (57-115)||(22781072-22781130)
chr8 (39-96)||(41721827-41721884)
[»] chr3 (17 HSPs)
chr3 (41-116)||(4041408-4041483)
chr3 (49-120)||(53197204-53197275)
chr3 (39-115)||(8799316-8799392)
chr3 (40-116)||(38499819-38499895)
chr3 (40-120)||(38500042-38500122)
chr3 (48-116)||(43797360-43797428)
chr3 (40-116)||(53196988-53197064)
chr3 (49-116)||(10696504-10696572)
chr3 (73-120)||(43797862-43797909)
chr3 (73-116)||(46883637-46883680)
chr3 (48-116)||(29828906-29828974)
chr3 (40-116)||(48346204-48346280)
chr3 (73-116)||(8799541-8799584)
chr3 (113-169)||(29828885-29828941)
chr3 (49-116)||(43797577-43797644)
chr3 (40-115)||(54420973-54421048)
chr3 (73-113)||(8657432-8657472)
[»] chr2 (14 HSPs)
chr2 (39-116)||(22563209-22563286)
chr2 (40-116)||(4371454-4371530)
chr2 (40-120)||(21265563-21265643)
chr2 (38-120)||(12232561-12232643)
chr2 (40-120)||(34645547-34645627)
chr2 (38-115)||(29893023-29893100)
chr2 (40-116)||(22563435-22563511)
chr2 (78-174)||(4371490-4371586)
chr2 (38-116)||(21265787-21265865)
chr2 (40-113)||(17200078-17200151)
chr2 (41-109)||(4682757-4682825)
chr2 (73-116)||(4682867-4682910)
chr2 (37-116)||(20296641-20296720)
chr2 (78-116)||(33491358-33491396)
[»] chr5 (13 HSPs)
chr5 (40-116)||(14076894-14076970)
chr5 (39-116)||(9862217-9862294)
chr5 (39-116)||(31193964-31194041)
chr5 (40-116)||(31194190-31194266)
chr5 (40-116)||(36955303-36955379)
chr5 (38-116)||(17370065-17370143)
chr5 (39-116)||(36955519-36955596)
chr5 (40-116)||(32347122-32347198)
chr5 (40-116)||(8754658-8754734)
chr5 (40-116)||(39635028-39635102)
chr5 (73-116)||(42546574-42546617)
chr5 (49-114)||(43449476-43449541)
chr5 (76-116)||(42546385-42546425)
[»] chr4 (23 HSPs)
chr4 (40-116)||(11789859-11789935)
chr4 (36-116)||(54316054-54316134)
chr4 (43-115)||(23655294-23655366)
chr4 (40-115)||(50544256-50544331)
chr4 (40-116)||(7061972-7062048)
chr4 (40-116)||(17914973-17915049)
chr4 (44-116)||(32591165-32591237)
chr4 (49-116)||(46993076-46993143)
chr4 (49-115)||(50551478-50551544)
chr4 (38-97)||(24673965-24674024)
chr4 (53-116)||(42475889-42475952)
chr4 (42-116)||(5465855-5465929)
chr4 (39-116)||(21785923-21786000)
chr4 (50-116)||(3556376-3556442)
chr4 (78-120)||(26297352-26297394)
chr4 (40-116)||(9551450-9551526)
chr4 (39-99)||(35256141-35256201)
chr4 (36-116)||(46993294-46993374)
chr4 (49-116)||(8538352-8538419)
chr4 (73-116)||(19037945-19037988)
chr4 (49-116)||(32591374-32591441)
chr4 (78-116)||(3556590-3556628)
chr4 (79-116)||(17914752-17914789)
[»] chr1 (14 HSPs)
chr1 (40-116)||(24883193-24883269)
chr1 (49-116)||(33156679-33156746)
chr1 (40-116)||(3385536-3385612)
chr1 (40-116)||(24882971-24883047)
chr1 (40-116)||(49776819-49776895)
chr1 (41-116)||(27171800-27171875)
chr1 (39-116)||(3385307-3385384)
chr1 (39-116)||(34622550-34622627)
chr1 (47-116)||(37948795-37948864)
chr1 (49-116)||(5771917-5771984)
chr1 (41-116)||(33401081-33401156)
chr1 (42-116)||(34969987-34970061)
chr1 (49-116)||(49777048-49777115)
chr1 (50-116)||(33400865-33400931)
[»] chr6 (5 HSPs)
chr6 (40-116)||(16125522-16125598)
chr6 (36-114)||(16125749-16125827)
chr6 (40-116)||(22748588-22748664)
chr6 (40-116)||(6705213-6705289)
chr6 (40-116)||(22748813-22748889)


Alignment Details
Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 140 - 304
Target Start/End: Original strand, 35363549 - 35363713
Alignment:
Q  140 gccacatatcttacatccaaatcctaaatgaagtacccgaactccctgcaaataatatgacaaaattgttgccttnnnnnnnnnnnnnntatgacaaaat 239  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||              |||||||||||    
T  35363549 gccacatatcttacctccaaatcctaaatggagtacccgaactccctgcaaataatatgacaaaattgttgtcttcaaaaaagaaaaaatatgacaaaat 35363648  T
Q  240 tgttgagaccaaaacnnnnnnnnaagtggagttgtgatcatgaccaagacttcacccattcaaat 304  Q
    |||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||    
T  35363649 tgttgagaccaaaacttttttttaagtggagttgtgatcatgaccaagacttcacccattcaaat 35363713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 35363289 - 35363394
Alignment:
Q  11 cataggtggatagctgcacccctctaaatgagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggc 110  Q
    |||||||||||||||||||||||  |||||||||||| ||||||||||||||| |||| || ||||||||||||||| |||| ||||||||| |||||||    
T  35363289 cataggtggatagctgcaccccttaaaatgagttcgggtatgctccatttaggctaagtttcatttactccatttagagtttagatgcaacacatgtggc 35363388  T
Q  111 aaaaaa 116  Q
    ||||||    
T  35363389 aaaaaa 35363394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 35207476 - 35207400
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||||||||||||||||||| ||| ||  |||||||||||||||||||||||||||| | |||||||||||||    
T  35207476 gagttcggatatgctccatttaggctaaactccatttactccatttagggtttggatgcaagacatgtggcaaaaaa 35207400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 19318450 - 19318373
Alignment:
Q  39 tgagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    ||||||||| ||||||||||||||| ||||||| |||||||||||||| ||||| ||||||| | |||||||||||||    
T  19318450 tgagttcgggtatgctccatttaggctaagcttcatttactccatttaaggtttagatgcaagacatgtggcaaaaaa 19318373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 35207178 - 35207254
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||| |||  |||||||||| ||||||  |||||||||||||||||||||||||||| | |||||||||||||    
T  35207178 gagttcgggtatattccatttaggctaagctccatttactccatttagggtttggatgcaagacatgtggcaaaaaa 35207254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 25048325 - 25048249
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||| ||||||||||||||| ||||||  ||||||| |||||||| ||||||||||| | ||||| |||||||    
T  25048325 gagttcgggtatgctccatttaggctaagctccatttacttcatttaggatttggatgcaagacatgtgacaaaaaa 25048249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 3740644 - 3740718
Alignment:
Q  41 agttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaa 115  Q
    ||||||| ||||||| ||||||||||| ||| ||||| |||||||| |||||||||| || ||||| ||||||||    
T  3740644 agttcgggtatgctcaatttaggttaaactttatttattccatttaaggtttggatgtaagatatgcggcaaaaa 3740718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 19318522 - 19318460
Alignment:
Q  38 atgagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaa 100  Q
    |||||||||| ||||||||||||||| ||||||  |||||||||||||| ||||| |||||||    
T  19318522 atgagttcgggtatgctccatttaggctaagctccatttactccatttaaggtttagatgcaa 19318460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 6408547 - 6408479
Alignment:
Q  49 tatgctccatttaggttaagcttaattt-actccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    ||||||||||||||||||| |||  ||| ||| |||||||||||||||||||| | |||||||||||||    
T  6408547 tatgctccatttaggttaaacttctttttacttcatttagggtttggatgcaagacatgtggcaaaaaa 6408479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 19318147 - 19318223
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    ||||| || |||||||||||||||||||||   ||||||||||||||| ||||||||| || | ||||| |||||||    
T  19318147 gagtttgggtatgctccatttaggttaagcgccatttactccatttagagtttggatgtaagacatgtgacaaaaaa 19318223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 39983929 - 39983878
Alignment:
Q  49 tatgctccatttaggttaagcttaatttactccatttagggtttggatgcaa 100  Q
    |||||||||||||||  |||||  ||||||||||||||||||||||||||||    
T  39983929 tatgctccatttaggcgaagctccatttactccatttagggtttggatgcaa 39983878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 2834500 - 2834426
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaa 114  Q
    ||||| || ||||||||||||||| |||| |  ||||| |||||||||||||||||| ||| | |||||||||||    
T  2834500 gagtttgggtatgctccatttaggctaagttccatttattccatttagggtttggatacaaaacatgtggcaaaa 2834426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 26903431 - 26903484
Alignment:
Q  39 tgagttcggatatgctccatttaggttaagcttaatttactccatttagggtttg 93  Q
    ||||||||| ||||||| ||||||| ||||||| ||||||| |||||||||||||    
T  26903431 tgagttcgggtatgctc-atttaggctaagcttcatttacttcatttagggtttg 26903484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 116
Target Start/End: Original strand, 39983779 - 39983817
Alignment:
Q  78 ctccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  39983779 ctccatttagggtttggatgcaagacatgtggcaaaaaa 39983817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 14999171 - 14999243
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaa 112  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| | |||||||||    
T  14999171 gagttcggatatgctccatttaggctaagctcaatttactccatttagggtttggatgcaagacatgtggcaa 14999243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 116
Target Start/End: Complemental strand, 15009161 - 15009083
Alignment:
Q  38 atgagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||| || | |||||||||||||    
T  15009161 atgagttcgggtatgctccatttaggctaagcttcatttactccatttagggtttggatgtaagacatgtggcaaaaaa 15009083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 8489369 - 8489449
Alignment:
Q  36 aaatgagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    ||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||||| || | |||||||||||||    
T  8489369 aaatgagtttgggtatgctccatttaggttaagcttcatttattccatttagggtttggatgtaagacatgtggcaaaaaa 8489449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 43801773 - 43801696
Alignment:
Q  39 tgagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    ||||||||| |||| |||||||||| ||||||  ||||||||||||||| |||||||||||| |||||||||||||||    
T  43801773 tgagttcgggtatgttccatttaggctaagctccatttactccatttagagtttggatgcaagatatgtggcaaaaaa 43801696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 116
Target Start/End: Original strand, 16324843 - 16324920
Alignment:
Q  39 tgagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||||  |||||||||||||| |||||| |||||| |||||||||||||||||||||| | ||||| |||||||    
T  16324843 tgagttcgggcatgctccatttaggctaagctcaatttaatccatttagggtttggatgcaagacatgtgacaaaaaa 16324920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 6911029 - 6911105
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||| | ||||||||||||||| ||||||  ||||||||||||||||||||||||| || | |||||||||||||    
T  6911029 gagttcaggtatgctccatttaggctaagctccatttactccatttagggtttggatgtaagacatgtggcaaaaaa 6911105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 14999478 - 14999419
Alignment:
Q  38 atgagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatg 97  Q
    |||||||||||||||||||||||||||||||||  ||||||| |||||||| ||||||||    
T  14999478 atgagttcggatatgctccatttaggttaagctacatttacttcatttaggatttggatg 14999419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 43801468 - 43801546
Alignment:
Q  38 atgagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||||| |||||| |||||||| ||| ||| ||||||||||||||| ||||||||| || | |||||||||||||    
T  43801468 atgagttcgggtatgcttcatttaggctaaacttcatttactccatttagagtttggatgtaagacatgtggcaaaaaa 43801546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 41404061 - 41403988
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaa 113  Q
    ||||| || |||||||||||||||||||| | ||||||||| ||||||||||||||||||| | ||||| ||||    
T  41404061 gagtttgggtatgctccatttaggttaagttcaatttactctatttagggtttggatgcaagacatgtgacaaa 41403988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 116
Target Start/End: Original strand, 41403760 - 41403835
Alignment:
Q  41 agttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    ||||||| |||||| ||||||| ||||||| ||||||||||||||||| ||| |||| || ||||||| |||||||    
T  41403760 agttcgggtatgcttcatttagattaagctcaatttactccatttaggattttgatgtaagatatgtgacaaaaaa 41403835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 6911297 - 6911254
Alignment:
Q  73 atttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||||||||||||||||||||||| | |||||||||||||    
T  6911297 atttactccatttagggtttggatgcaagacatgtggcaaaaaa 6911254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 9133900 - 9133974
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttaggg-tttggatgcaacatatgtggcaaa 113  Q
    ||||| || ||||||| |||||||| ||||| |||||||||||||||||| ||||||||||  | ||||||||||    
T  9133900 gagtttgggtatgctctatttaggtaaagctcaatttactccatttagggatttggatgcatgacatgtggcaaa 9133974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 22781320 - 22781274
Alignment:
Q  73 atttactccatttagggtttggatgcaacatatgtggcaaaaaatat 119  Q
    |||||||| ||||||||||||||||||| ||||||| ||||||||||    
T  22781320 atttactcaatttagggtttggatgcaagatatgtgacaaaaaatat 22781274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 9134249 - 9134323
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttaggg-tttggatgcaacatatgtggcaaa 113  Q
    ||||| || |||||||||||||||| | ||| |||||||||||||||||| | ||||||||  | ||||||||||    
T  9134249 gagtttgggtatgctccatttaggtaatgctcaatttactccatttagggatatggatgcatgacatgtggcaaa 9134323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 22781072 - 22781130
Alignment:
Q  57 atttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaa 115  Q
    ||||||| ||| ||| |||||||||||| |||||||||||||||   ||||||||||||    
T  22781072 atttaggctaaacttcatttactccattcagggtttggatgcaaggcatgtggcaaaaa 22781130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 41721827 - 41721884
Alignment:
Q  39 tgagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggat 96  Q
    ||||||||||||||||| |||||| |||||||  ||||||| |||||| | |||||||    
T  41721827 tgagttcggatatgctcgatttagattaagctccatttacttcatttaagatttggat 41721884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 4041483 - 4041408
Alignment:
Q  41 agttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    ||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||| | |||||||||||||    
T  4041483 agttcgggtatgctccatttaggctaagcttcatttactccatttagggtttggatgcaagacatgtggcaaaaaa 4041408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 53197275 - 53197204
Alignment:
Q  49 tatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaatatc 120  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||| | |||||||||||||||||    
T  53197275 tatgctccatttaggctaagcttcatttactccatttagggtttggatgcaagacatgtggcaaaaaatatc 53197204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 8799316 - 8799392
Alignment:
Q  39 tgagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaa 115  Q
    ||||||||| ||||||||||||||| || |||  |||||||||||||||||||||||||||| | ||||||||||||    
T  8799316 tgagttcgggtatgctccatttaggctaggctccatttactccatttagggtttggatgcaagacatgtggcaaaaa 8799392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 38499819 - 38499895
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||| ||||||||||||||| ||||||  |||||||||||||||||||||||| ||| | |||||||||||||    
T  38499819 gagttcgggtatgctccatttaggctaagctccatttactccatttagggtttggatacaagacatgtggcaaaaaa 38499895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 38500122 - 38500042
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaatatc 120  Q
    |||||||| ||||||||||||||| ||||||  |||||||||| |||||||||||||| || | |||||| ||||||||||    
T  38500122 gagttcgggtatgctccatttaggctaagctccatttactccaattagggtttggatgtaagacatgtggaaaaaaatatc 38500042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 43797360 - 43797428
Alignment:
Q  48 atatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||||||||||| ||||||  |||||||||||||| ||||||||||||| | |||||||||||||    
T  43797360 atatgctccatttaggctaagctccatttactccatttaaggtttggatgcaagacatgtggcaaaaaa 43797428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 53196988 - 53197064
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||| ||||| ||||||| | ||| ||| |||||||| ||||||||||||||||||| | |||||||||||||    
T  53196988 gagttcgggtatgccccatttaagctaaacttcatttactctatttagggtttggatgcaaaacatgtggcaaaaaa 53197064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 10696504 - 10696572
Alignment:
Q  49 tatgctccatttaggttaagcttaatttactccattta-gggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||||||||||| | ||| |||||| |||||||| |||||||||||||| | |||||||||||||    
T  10696504 tatgctccatttaggtaatgctcaatttagtccatttaggggtttggatgcaagacatgtggcaaaaaa 10696572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 43797909 - 43797862
Alignment:
Q  73 atttactccatttagggtttggatgcaacatatgtggcaaaaaatatc 120  Q
    ||||||||||||||||| |||||||||| | |||||||||||||||||    
T  43797909 atttactccatttagggcttggatgcaagacatgtggcaaaaaatatc 43797862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 46883680 - 46883637
Alignment:
Q  73 atttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||||||||||||||||||||||| | |||||||||||||    
T  46883680 atttactccatttagggtttggatgcaagacatgtggcaaaaaa 46883637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 29828974 - 29828906
Alignment:
Q  48 atatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||| ||||| | ||||||  ||||| |||||||||| |||||||| || |||||||||||||||    
T  29828974 atatgctctatttaagctaagctccatttattccatttaggatttggatgtaagatatgtggcaaaaaa 29828906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 48346280 - 48346204
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||| ||||||||||||||||| || |  |||||||  ||||||  ||||||||||| | |||||||||||||    
T  48346280 gagttcgggtatgctccatttaggttgagttctatttactttatttagaatttggatgcaaaacatgtggcaaaaaa 48346204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 8799584 - 8799541
Alignment:
Q  73 atttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||||||||||||||| ||||||| | |||||||||||||    
T  8799584 atttactccatttagggtttagatgcaagacatgtggcaaaaaa 8799541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 29828885 - 29828941
Alignment:
Q  113 aaaatatcaaccgttagatannnnnnngccacatatcttacatccaaatcctaaatg 169  Q
    ||||| ||||||||||||||       ||||||||||||||||||||||||||||||    
T  29828885 aaaatctcaaccgttagatatttttttgccacatatcttacatccaaatcctaaatg 29828941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 43797644 - 43797577
Alignment:
Q  49 tatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    ||||||||||||||| |||| |  |||||||| |||||||||||||||| || | ||||| |||||||    
T  43797644 tatgctccatttaggctaagatccatttactctatttagggtttggatgaaagacatgtgacaaaaaa 43797577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 54420973 - 54421048
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaa 115  Q
    |||||||| |||||||||||||  |||| ||| ||||||||||||||| ||  ||||||||   ||||||||||||    
T  54420973 gagttcgggtatgctccatttatattaaacttcatttactccatttagtgtacggatgcaagccatgtggcaaaaa 54421048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 8657432 - 8657472
Alignment:
Q  73 atttactccatttagggtttggatgcaacatatgtggcaaa 113  Q
    ||||||||||||||||||||| |||||| | ||||||||||    
T  8657432 atttactccatttagggtttgaatgcaagacatgtggcaaa 8657472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 39 - 116
Target Start/End: Original strand, 22563209 - 22563286
Alignment:
Q  39 tgagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    ||||||||| ||||||||||||||| ||||||  |||||||||||||||||||||||||||| | |||||||||||||    
T  22563209 tgagttcgggtatgctccatttaggctaagctccatttactccatttagggtttggatgcaagacatgtggcaaaaaa 22563286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 4371454 - 4371530
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||| ||||||||||||||| ||||||  |||||||||||||||||||||||||||| | |||||||||||||    
T  4371454 gagttcgggtatgctccatttaggctaagctccatttactccatttagggtttggatgcaagacatgtggcaaaaaa 4371530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 21265563 - 21265643
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaatatc 120  Q
    ||||| || ||||||||||||||  |||||| ||||||||||||||||||||||||||||| | |||||||||||||||||    
T  21265563 gagttagggtatgctccatttagactaagctcaatttactccatttagggtttggatgcaagacatgtggcaaaaaatatc 21265643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 12232561 - 12232643
Alignment:
Q  38 atgagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaatatc 120  Q
    ||||||| |||||||||||||||||| ||||||  |||||||| |||||||||||||||| || | |||||||||||||||||    
T  12232561 atgagtttggatatgctccatttaggctaagctccatttactctatttagggtttggatgtaagacatgtggcaaaaaatatc 12232643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 34645547 - 34645627
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaatatc 120  Q
    |||||||| ||||||| |||||||||||| |  |||||||||||||||||| ||||||||| | |||||||||||||||||    
T  34645547 gagttcgggtatgctctatttaggttaagttctatttactccatttagggtatggatgcaagacatgtggcaaaaaatatc 34645627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 29893100 - 29893023
Alignment:
Q  38 atgagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaa 115  Q
    |||||||||| ||||||||||||||| ||||||  |||||||| ||||||||||||||||||| | ||||| ||||||    
T  29893100 atgagttcgggtatgctccatttaggctaagctctatttactctatttagggtttggatgcaagacatgtgacaaaaa 29893023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 22563511 - 22563435
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||| ||||||||||||||| ||| ||  |||||||||||||||| ||||||||||| | |||||||||||||    
T  22563511 gagttcgggtatgctccatttaggctaaactccatttactccatttaggatttggatgcaagacatgtggcaaaaaa 22563435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 78 - 174
Target Start/End: Complemental strand, 4371586 - 4371490
Alignment:
Q  78 ctccatttagggtttggatgcaacatatgtggcaaaaaatatcaaccgttagatannnnnnngccacatatcttacatccaaatcctaaatgaagta 174  Q
    ||||||||||||||||||||||| | |||||||||||||| |||||| |||||||       ||||||| |||| |||||||| |||||||| ||||    
T  4371586 ctccatttagggtttggatgcaagacatgtggcaaaaaatctcaaccattagatatttttttgccacatgtcttgcatccaaaccctaaatggagta 4371490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 116
Target Start/End: Complemental strand, 21265865 - 21265787
Alignment:
Q  38 atgagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||||  ||||||| ||||| | ||||||  |||||||| ||||||||||||||||||| | |||||||||||||    
T  21265865 atgagttcgagtatgctctatttaagctaagctccatttactctatttagggtttggatgcaagacatgtggcaaaaaa 21265787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 17200078 - 17200151
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaa 113  Q
    |||||||| |||||||||||||||  |||||  |||||||||||||||| |||||||| || | ||||||||||    
T  17200078 gagttcgggtatgctccatttaggcaaagctccatttactccatttaggatttggatgtaagacatgtggcaaa 17200151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 4682757 - 4682825
Alignment:
Q  41 agttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtgg 109  Q
    ||||||| |||| ||||||||  |||||||| ||||||||||||||| |||| ||||||| | ||||||    
T  4682757 agttcgggtatgttccatttaatttaagcttcatttactccatttagagtttagatgcaagacatgtgg 4682825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 4682910 - 4682867
Alignment:
Q  73 atttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    ||||||| ||||||||| |||||||||| |||||||||||||||    
T  4682910 atttacttcatttagggcttggatgcaagatatgtggcaaaaaa 4682867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 116
Target Start/End: Complemental strand, 20296720 - 20296641
Alignment:
Q  37 aatgagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||| || ||||||| ||||||| ||||||  |||||||||||||| |  ||||||| || | |||||||||||||    
T  20296720 aatgagtttgggtatgctctatttaggctaagctccatttactccatttaagaattggatgtaagacatgtggcaaaaaa 20296641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 116
Target Start/End: Original strand, 33491358 - 33491396
Alignment:
Q  78 ctccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  33491358 ctccatttagggtttggatgcaagacatgtggcaaaaaa 33491396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 14076970 - 14076894
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||||||||||||||||||| |||| |  |||||||||||||||||||||||||||| | |||||||||||||    
T  14076970 gagttcggatatgctccatttaggctaagttctatttactccatttagggtttggatgcaagacatgtggcaaaaaa 14076894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 9862294 - 9862217
Alignment:
Q  39 tgagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||| || ||||||||||||||| |||| ||  ||||||||||||||||||||||||||| |||||||||||||||    
T  9862294 tgagtttgggtatgctccatttagggtaagtttcgtttactccatttagggtttggatgcaagatatgtggcaaaaaa 9862217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 116
Target Start/End: Original strand, 31193964 - 31194041
Alignment:
Q  39 tgagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    ||||||||| ||||||||||||||| ||||||  |||||||||||||| ||||||||||||| | |||||||||||||    
T  31193964 tgagttcgggtatgctccatttaggctaagctccatttactccatttaaggtttggatgcaagacatgtggcaaaaaa 31194041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 31194266 - 31194190
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||| ||||||||||||||| ||||||  |||||||||||||| ||||||||||||| | |||||||||||||    
T  31194266 gagttcgggtatgctccatttaggctaagctccatttactccatttaaggtttggatgcaagacatgtggcaaaaaa 31194190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 36955303 - 36955379
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||| || |||||||||||| ||||||| |||||||||||||||||||||||||||| | ||||| |||||||    
T  36955303 gagttcgggtaggctccatttaggctaagcttcatttactccatttagggtttggatgcaagacatgtgacaaaaaa 36955379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 17370065 - 17370143
Alignment:
Q  38 atgagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||||| ||||||||||||| | ||| ||  |||||||||||||||||||||||||||| | |||||||||||||    
T  17370065 atgagttcgggtatgctccatttatgctaaactccatttactccatttagggtttggatgcaagacatgtggcaaaaaa 17370143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 36955596 - 36955519
Alignment:
Q  39 tgagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||| || || |||||||||||| ||||||  |||||||| ||||||||||||| ||||| | |||||||||||||    
T  36955596 tgagtttgggtacgctccatttaggctaagctctatttactctatttagggtttggttgcaagacatgtggcaaaaaa 36955519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 32347198 - 32347122
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||| ||||||||||||||||| ||||||  | |||||||||||| |||||||||| || | ||||| |||||||    
T  32347198 gagttcagatatgctccatttaggctaagctccaattactccatttaaggtttggatgtaagacatgtgacaaaaaa 32347122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 8754658 - 8754734
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||| ||| ||||||||||  ||| ||  |||||||| |||||||||||||||| || | |||||||||||||    
T  8754658 gagttcgggtatcctccatttagactaaactccatttactctatttagggtttggatggaagacatgtggcaaaaaa 8754734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 39635102 - 39635028
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||| ||||||| ||||||| ||||||| || ||||| |||||||||||||||| || ||||| |||||||||    
T  39635102 gagttcgg-tatgctctatttaggctaagcttcatatactc-atttagggtttggatgtaagatatgcggcaaaaaa 39635028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 42546617 - 42546574
Alignment:
Q  73 atttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||||||||||||||||||||||| | ||||| |||||||    
T  42546617 atttactccatttagggtttggatgcaagacatgtgacaaaaaa 42546574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 43449476 - 43449541
Alignment:
Q  49 tatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaa 114  Q
    |||||||||||||  | ||||| |||||| || ||||||| ||||||||||| | |||||||||||    
T  43449476 tatgctccatttacctaaagctcaatttagtctatttaggctttggatgcaagacatgtggcaaaa 43449541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 42546385 - 42546425
Alignment:
Q  76 tactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    ||||||||||||||||||||||||| | || ||||||||||    
T  42546385 tactccatttagggtttggatgcaagacatttggcaaaaaa 42546425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 11789859 - 11789935
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||| |||||||||||||||  |||||| |||||||||||||||||||| ||||||| |||||||||||||||    
T  11789859 gagttcgggtatgctccatttaggcaaagcttcatttactccatttagggtttagatgcaagatatgtggcaaaaaa 11789935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 54316134 - 54316054
Alignment:
Q  36 aaatgagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||| ||| ||||||||||||||| ||||||  |||||||||||||||||||||||||||| | |||||||||||||    
T  54316134 aaatgagtccgggtatgctccatttaggctaagctctatttactccatttagggtttggatgcaagacatgtggcaaaaaa 54316054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 23655366 - 23655294
Alignment:
Q  43 ttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaa 115  Q
    ||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||||| | ||||||||||||    
T  23655366 ttcgggtatgctccatttaggttaagcttcatttattccatttagggtttagatgcaagacatgtggcaaaaa 23655294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 50544256 - 50544331
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaa 115  Q
    |||||||||||||||||||||||| ||||||  ||||| || ||||||||||||||||||| | ||||||||||||    
T  50544256 gagttcggatatgctccatttaggctaagctccatttattctatttagggtttggatgcaagacatgtggcaaaaa 50544331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 7061972 - 7062048
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||| ||||||||||||||| ||| ||  |||||||||||||| ||||||||||||| | |||||||||||||    
T  7061972 gagttcgggtatgctccatttaggctaacctctatttactccatttatggtttggatgcaagacatgtggcaaaaaa 7062048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 17915049 - 17914973
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||||||||||||||||||| |||| |  ||||||||||||||  |||||||||||| | |||||||||||||    
T  17915049 gagttcggatatgctccatttaggctaagttccatttactccatttaaagtttggatgcaagacatgtggcaaaaaa 17914973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 32591165 - 32591237
Alignment:
Q  44 tcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||| ||||||| ||||||||||||||  |||||||||||||| |||||| |||||| |||||||||||||||    
T  32591165 tcgggtatgctctatttaggttaagctccatttactccatttaaggtttgtatgcaaaatatgtggcaaaaaa 32591237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 46993076 - 46993143
Alignment:
Q  49 tatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    ||||||||||||||||||||||  ||||| || ||||||||||||||||||| |||||| ||||||||    
T  46993076 tatgctccatttaggttaagctccatttattctatttagggtttggatgcaagatatgtagcaaaaaa 46993143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 50551544 - 50551478
Alignment:
Q  49 tatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaa 115  Q
    ||||||||||||||| ||| ||| |||||||||||||| |||||||||| || ||||||||||||||    
T  50551544 tatgctccatttaggctaaactttatttactccatttaaggtttggatgtaagatatgtggcaaaaa 50551478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 24674024 - 24673965
Alignment:
Q  38 atgagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatg 97  Q
    |||||||||||||||||||||||||| ||| ||| |||||||| |||||| |||||||||    
T  24674024 atgagttcggatatgctccatttaggctaaacttcatttactctatttagagtttggatg 24673965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 116
Target Start/End: Original strand, 42475889 - 42475952
Alignment:
Q  53 ctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    ||||||||||| ||||||| |||||||| ||||||||||||||||||| | | |||||||||||    
T  42475889 ctccatttaggctaagcttcatttactctatttagggtttggatgcaagacacgtggcaaaaaa 42475952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 5465855 - 5465929
Alignment:
Q  42 gttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||| ||||||||||||||| |||| || ||||||| |||||||||||| |||| || | |||||||||||||    
T  5465855 gttcgggtatgctccatttaggctaagtttcatttacttcatttagggtttagatgtaagacatgtggcaaaaaa 5465929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 21786000 - 21785923
Alignment:
Q  39 tgagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||||||||   ||||||||| ||||||  ||||||||||||||| |||||||||||  | |||||||||||||    
T  21786000 tgagttcggatatatcccatttaggctaagctccatttactccatttagagtttggatgcattacatgtggcaaaaaa 21785923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 3556376 - 3556442
Alignment:
Q  50 atgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||||||| | ||| ||| |||||||||||||| ||||||||||||| | |||| ||||||||    
T  3556376 atgctccatttaagctaaacttcatttactccatttaaggtttggatgcaagacatgttgcaaaaaa 3556442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 26297352 - 26297394
Alignment:
Q  78 ctccatttagggtttggatgcaacatatgtggcaaaaaatatc 120  Q
    ||||||||||||||||||||||| | |||||||||||||||||    
T  26297352 ctccatttagggtttggatgcaagacatgtggcaaaaaatatc 26297394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 9551526 - 9551450
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||| ||||||||||||||  ||| ||  ||||||||||||||||| ||||||| || | || ||||||||||    
T  9551526 gagttcgggtatgctccatttagactaaactccatttactccatttagggcttggatggaagacatttggcaaaaaa 9551450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 35256141 - 35256201
Alignment:
Q  39 tgagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgca 99  Q
    ||||||||| ||||||| ||||||  ||||||  ||||||||||||||| |||||||||||    
T  35256141 tgagttcgggtatgctctatttagactaagctgcatttactccatttagagtttggatgca 35256201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 46993374 - 46993294
Alignment:
Q  36 aaatgagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||| ||| |||||||||||||   |||||| ||||||||||||||| | |||| |||||| |||| | ||||||||    
T  46993374 aaatgagtccgggtatgctccatttaaactaagctcaatttactccatttaagatttgaatgcaagatatttagcaaaaaa 46993294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 8538419 - 8538352
Alignment:
Q  49 tatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    ||||||||||||||  | ||||  ||||| |||||||||||||||||||||| | ||||| |||||||    
T  8538419 tatgctccatttagtattagctccatttagtccatttagggtttggatgcaagacatgtgtcaaaaaa 8538352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 19037988 - 19037945
Alignment:
Q  73 atttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||||||||||| ||||||||||| | |||||||||||||    
T  19037988 atttactccatttaggatttggatgcaagacatgtggcaaaaaa 19037945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 32591441 - 32591374
Alignment:
Q  49 tatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    ||||||||||||| |||||| || |||||||| ||||||| |||||||| || | |||||| ||||||    
T  32591441 tatgctccatttaagttaagttttatttactcaatttaggatttggatgtaagacatgtggtaaaaaa 32591374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 3556628 - 3556590
Alignment:
Q  78 ctccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  3556628 ctccatttagggtttggatgcaagacatgtggcaaaaaa 3556590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 17914752 - 17914789
Alignment:
Q  79 tccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||||||||||||||||| | |||||||||||||    
T  17914752 tccatttagggtttggatgcaagacatgtggcaaaaaa 17914789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 24883269 - 24883193
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||| |||| |||||||||| ||||||  |||||||||||||||||||||||||||| |||||||||||||||    
T  24883269 gagttcgggtatgttccatttaggctaagctccatttactccatttagggtttggatgcaagatatgtggcaaaaaa 24883193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 33156746 - 33156679
Alignment:
Q  49 tatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||| ||| | |||||||||||||    
T  33156746 tatgctccatttaggctaagctttatttactccatttagggtttggatacaagacatgtggcaaaaaa 33156679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 3385612 - 3385536
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||| |||||||||||||||  |||||  ||||||||||||||||||||||||| || |||||||| ||||||    
T  3385612 gagttcgggtatgctccatttaggccaagctccatttactccatttagggtttggatgtaagatatgtggtaaaaaa 3385536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 24882971 - 24883047
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||| ||||||||||||||| ||| ||  |||||||||||||||||||||||||||| | | |||||||||||    
T  24882971 gagttcgggtatgctccatttaggctaatctccatttactccatttagggtttggatgcaagacacgtggcaaaaaa 24883047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 49776819 - 49776895
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||| ||||||||||||| | ||||||| |||||||||||||||| ||||||||||| | |||||| ||||||    
T  49776819 gagttcgggtatgctccatttaagctaagctttatttactccatttaggatttggatgcaagacatgtggtaaaaaa 49776895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 41 - 116
Target Start/End: Original strand, 27171800 - 27171875
Alignment:
Q  41 agttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    ||||||| |||||| |||||||| ||||||| |||||||||||||| |||||||||| || | |||||||||||||    
T  27171800 agttcgggtatgcttcatttaggctaagcttcatttactccatttatggtttggatgtaagacatgtggcaaaaaa 27171875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 39 - 116
Target Start/End: Original strand, 3385307 - 3385384
Alignment:
Q  39 tgagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    ||||||||| |||||| |||||||| |||||||  ||||| |||||||||||||||||| || | |||||||||||||    
T  3385307 tgagttcgggtatgcttcatttaggctaagcttcgtttaccccatttagggtttggatgtaagacatgtggcaaaaaa 3385384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 34622627 - 34622550
Alignment:
Q  39 tgagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    ||||||||| ||||||||||||||  ||||||  | |||||||||||| |||||| |||||| | |||||||||||||    
T  34622627 tgagttcgggtatgctccatttagactaagctccagttactccatttaaggtttgaatgcaagacatgtggcaaaaaa 34622550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 37948795 - 37948864
Alignment:
Q  47 gatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    ||||||||||||||| ||||||||| |||||||| ||||| |||||||||| || | |||| ||||||||    
T  37948795 gatatgctccatttaagttaagcttcatttactcaatttaaggtttggatgtaagacatgttgcaaaaaa 37948864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 5771917 - 5771984
Alignment:
Q  49 tatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    ||||||||||||||  ||||||| ||||||||||||||| ||||| ||| || |||| ||||||||||    
T  5771917 tatgctccatttagactaagcttcatttactccatttagagtttgaatgtaagatatatggcaaaaaa 5771984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 33401156 - 33401081
Alignment:
Q  41 agttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||||||||| |||||||| |||||| ||||||||  ||||| ||||| |||| || | |||||||||||||    
T  33401156 agttcggatatgctacatttaggctaagctcaatttactttatttaaggtttagatgtaagacatgtggcaaaaaa 33401081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 34969987 - 34970061
Alignment:
Q  42 gttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||| |||||| |||||||||||| ||  |||||||| ||||||| ||||||||||| | |||||| ||||||    
T  34969987 gttcgggtatgcttcatttaggttaaactccatttactcaatttaggatttggatgcaagacatgtggtaaaaaa 34970061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 49777115 - 49777048
Alignment:
Q  49 tatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    ||||||||||||||| ||| ||  ||||| || ||||||||||||||||||| | ||||| |||||||    
T  49777115 tatgctccatttaggctaaactccatttattctatttagggtttggatgcaagacatgtgacaaaaaa 49777048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 33400865 - 33400931
Alignment:
Q  50 atgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||||||| | ||||||  |||||||||||||| |||||||||| ||   |||||||||||||    
T  33400865 atgctccatttaagctaagctccatttactccatttaaggtttggatgtaaggcatgtggcaaaaaa 33400931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 16125522 - 16125598
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||| ||||||||||||||| ||| ||| ||||| | |||||||||||||||||||| | |||||||||||||    
T  16125522 gagttcgggtatgctccatttaggctaaacttcatttatttcatttagggtttggatgcaagacatgtggcaaaaaa 16125598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 16125827 - 16125749
Alignment:
Q  36 aaatgagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaa 114  Q
    |||||||||||||||||||| ||||||  ||||||  |||||||| |||||| | |||||||||| ||||||| |||||    
T  16125827 aaatgagttcggatatgctctatttagactaagctccatttactcaatttagagcttggatgcaagatatgtgacaaaa 16125749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 22748588 - 22748664
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||||| ||||||| ||||||| || |||  |||||||||||||| | ||||||||||| | |||||||||||||    
T  22748588 gagttcgggtatgctcaatttaggctatgctccatttactccatttaagatttggatgcaagacatgtggcaaaaaa 22748664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 6705213 - 6705289
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    ||||| || ||||||||| |||||||||| || ||||| |||||||| | ||| |||| || |||||||||||||||    
T  6705213 gagtttgggtatgctccaattaggttaagtttcatttattccatttaagattttgatgtaagatatgtggcaaaaaa 6705289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 22748889 - 22748813
Alignment:
Q  40 gagttcggatatgctccatttaggttaagcttaatttactccatttagggtttggatgcaacatatgtggcaaaaaa 116  Q
    |||||| | ||||||||||||||  |||| |  |||||||||||||||| |||||||| || | |||||| ||||||    
T  22748889 gagttcaggtatgctccatttagactaagatccatttactccatttaggatttggatgaaagacatgtggtaaaaaa 22748813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University