View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15720_high_21 (Length: 301)
Name: NF15720_high_21
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15720_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 52033660 - 52033380
Alignment:
| Q |
1 |
actcttacgatgagcaccgtccacattccaaatccaatggacgtgactttgagttgagtctttactatgacatcgaatcacgtgttaaattgaacccact |
100 |
Q |
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| T |
52033660 |
actcttacgatgagcaccgtccacattccaaatccaatggacgtgactttgagttgagtctttactatgacatcgaatcacgtgttaaattgaacccact |
52033561 |
T |
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| Q |
101 |
tnnnnnnnncgtacatttatcacatggttgatcttcggttgagaccactgtagctaacagccaacacaaacaacagtccctgctacactgctacatcgtt |
200 |
Q |
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| T |
52033560 |
taaaaaaaacgtacatttatcacatggttgatcttcggttgagaccactgtagctaaca----acacaaacaacagtccctgctacactgctacatcgtt |
52033465 |
T |
|
| Q |
201 |
tttagattctggaagttgatcccaatcgggagagaaaatttatccatggcagagtacaacaattcaagttcaacaacacaagtac |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
52033464 |
tttagattctggaagttgatcccaatcgggagagaaaatttatccatggcagagtacaataattcaagttcaacaacacaagtac |
52033380 |
T |
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