View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15720_high_22 (Length: 300)

Name: NF15720_high_22
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15720_high_22
NF15720_high_22
[»] chr4 (5 HSPs)
chr4 (11-293)||(3746186-3746467)
chr4 (11-94)||(13538252-13538336)
chr4 (11-103)||(31351661-31351754)
chr4 (53-92)||(38415494-38415533)
chr4 (35-92)||(35010382-35010439)
[»] chr8 (3 HSPs)
chr8 (18-102)||(1028751-1028836)
chr8 (35-90)||(28300139-28300194)
chr8 (58-102)||(19756417-19756461)
[»] chr1 (1 HSPs)
chr1 (15-102)||(2098777-2098864)
[»] chr7 (6 HSPs)
chr7 (12-93)||(37307687-37307769)
chr7 (11-94)||(9667228-9667312)
chr7 (58-94)||(27227261-27227297)
chr7 (36-98)||(23982068-23982130)
chr7 (36-93)||(24250144-24250201)
chr7 (58-94)||(47684484-47684520)
[»] chr3 (3 HSPs)
chr3 (11-93)||(9737574-9737657)
chr3 (58-103)||(52910376-52910421)
chr3 (58-94)||(11988928-11988964)
[»] chr2 (2 HSPs)
chr2 (58-103)||(37123631-37123676)
chr2 (58-94)||(8915639-8915675)


Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 11 - 293
Target Start/End: Complemental strand, 3746467 - 3746186
Alignment:
Q  11 cagagatattatgtgtaggggtgaggttcgaaccctgtattttccatttctccatacataatgtgtttgaatctagccactagattacctgatnnnnnnn 110  Q
    ||||||||||||||||||||||||||||||||||| | |||| ||||||||||| | ||||||||| | ||||||||| |||| |||| ||||           
T  3746467 cagagatattatgtgtaggggtgaggttcgaaccccggatttcccatttctccacatataatgtgtgtaaatctagccgctaggttacttgataaaaaaa 3746368  T
Q  111 tcttttgtcctttttagttcacttttctccctctatatttggtgtcttataaacaaacccctcttagctacacttcattcatcttccattattctcttct 210  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3746367 tcttttgtcctttttagttcacttttctccctctatacttgttgtcttataaacaaacccctcttggctacacttcattcatcttccattattctcttct 3746268  T
Q  211 ctccttcactactttggcttctctagagttagcatcaaaatcactcttagccccaccaccaagcctacccaacacttcctcac 293  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||    
T  3746267 ctccttcactattttggtttctctagagttagcatcaaaatcactc-taaccccaccaccatgcctacccaacacttcctcac 3746186  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 13538336 - 13538252
Alignment:
Q  11 cagagatattatgtgtagggg-tgaggttcgaaccctgtattttccatttctccatacataatgtgtttgaatctagccactaga 94  Q
    |||||||| | |||||||||| ||  ||||||||||   |||| ||| ||||||||||||||||||| |||||||||||||||||    
T  13538336 cagagataatttgtgtaggggctggagttcgaaccccaaatttcccacttctccatacataatgtgtgtgaatctagccactaga 13538252  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 31351754 - 31351661
Alignment:
Q  11 cagagatattatgtgtaggggt-gaggttcgaaccctgtattttccatttctccatacataatgtgtttgaatctagccactagattacctgat 103  Q
    |||||||| | |||| |||||| | ||||||||| | | |||| ||||||||||| ||||||| ||| ||||||||||||||||| ||| ||||    
T  31351754 cagagataatttgtgcaggggtcggggttcgaactccggatttcccatttctccacacataatatgtgtgaatctagccactagactacttgat 31351661  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 38415533 - 38415494
Alignment:
Q  53 tccatttctccatacataatgtgtttgaatctagccacta 92  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  38415533 tccatttcttcatacataatgtgtgtgaatctagccacta 38415494  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 35010439 - 35010382
Alignment:
Q  35 ggttcgaaccctgtattttccatttctccatacataatgtgtttgaatctagccacta 92  Q
    ||||||||| | | |||| ||| ||||||| ||||||||||| |||||||||||||||    
T  35010439 ggttcgaactccggatttcccacttctccacacataatgtgtatgaatctagccacta 35010382  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 1028751 - 1028836
Alignment:
Q  18 attatgtgtagggg-tgaggttcgaaccctgtattttccatttctccatacataatgtgtttgaatctagccactagattacctga 102  Q
    |||||||| ||||| |||||||||||| | | ||| | || |||| |||||||||||||| ||||||||||||||||| |||||||    
T  1028751 attatgtgcaggggctgaggttcgaactccggattcttcacttcttcatacataatgtgtgtgaatctagccactagactacctga 1028836  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 28300139 - 28300194
Alignment:
Q  35 ggttcgaaccctgtattttccatttctccatacataatgtgtttgaatctagccac 90  Q
    ||||||||||| | |||  ||| ||||||||||||||||||| |||||||||||||    
T  28300139 ggttcgaaccccggattccccacttctccatacataatgtgtgtgaatctagccac 28300194  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 19756461 - 19756417
Alignment:
Q  58 ttctccatacataatgtgtttgaatctagccactagattacctga 102  Q
    ||||||| ||||||||||| ||||||||||||||||  |||||||    
T  19756461 ttctccacacataatgtgtgtgaatctagccactaggctacctga 19756417  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 2098777 - 2098864
Alignment:
Q  15 gatattatgtgtaggggtgaggttcgaaccctgtattttccatttctccatacataatgtgtttgaatctagccactagattacctga 102  Q
    ||||||||||||||||| |   | ||||||| | ||| |||| ||||||| | ||||||||| |||||||||||||||||||| ||||    
T  2098777 gatattatgtgtaggggcggaatccgaaccccggattctccacttctccacatataatgtgtgtgaatctagccactagattatctga 2098864  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 37307687 - 37307769
Alignment:
Q  12 agagatattatgtgtaggggt-gaggttcgaaccctgtattttccatttctccatacataatgtgtttgaatctagccactag 93  Q
    ||||||||||||||| ||||| | ||||||||| | | |||  ||| ||||||| | ||||||||||||||||||||||||||    
T  37307687 agagatattatgtgtcggggtcggggttcgaactccggattccccacttctccacaaataatgtgtttgaatctagccactag 37307769  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 9667312 - 9667228
Alignment:
Q  11 cagagatattatgtgtagggg-tgaggttcgaaccctgtattttccatttctccatacataatgtgtttgaatctagccactaga 94  Q
    |||||||| | |||||||||| ||  ||||||||||   |||| ||| ||||||||||||||||||| |||||| ||||||||||    
T  9667312 cagagataatttgtgtaggggctggagttcgaaccccaaatttcccacttctccatacataatgtgtgtgaatccagccactaga 9667228  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 27227297 - 27227261
Alignment:
Q  58 ttctccatacataatgtgtttgaatctagccactaga 94  Q
    ||||||| |||||||||||||||||||||||||||||    
T  27227297 ttctccacacataatgtgtttgaatctagccactaga 27227261  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 23982068 - 23982130
Alignment:
Q  36 gttcgaaccctgtattttccatttctccatacataatgtgtttgaatctagccactagattac 98  Q
    |||||||| | | ||| ||||||||||   ||||||||||| |||||||||||||||||||||    
T  23982068 gttcgaactccggattctccatttctctgcacataatgtgtgtgaatctagccactagattac 23982130  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 24250201 - 24250144
Alignment:
Q  36 gttcgaaccctgtattttccatttctccatacataatgtgtttgaatctagccactag 93  Q
    |||||||||||| ||| |||| || |||| ||||||||||| ||||||||| ||||||    
T  24250201 gttcgaaccctggattctccacttttccacacataatgtgtgtgaatctagtcactag 24250144  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 47684520 - 47684484
Alignment:
Q  58 ttctccatacataatgtgtttgaatctagccactaga 94  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  47684520 ttctccatacataatgtgtgtgaatctagccaataga 47684484  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 9737657 - 9737574
Alignment:
Q  11 cagagatattatgtgtaggggtgagg-ttcgaaccctgtattttccatttctccatacataatgtgtttgaatctagccactag 93  Q
    ||||||||||||||| |||||| ||| ||||||||  | |||||| ||||||| | ||||||||||| ||||| || |||||||    
T  9737657 cagagatattatgtgcaggggtcagggttcgaacctcgaattttctatttctctacacataatgtgtgtgaatataaccactag 9737574  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 52910421 - 52910376
Alignment:
Q  58 ttctccatacataatgtgtttgaatctagccactagattacctgat 103  Q
    ||||||| ||||||||||| ||||||||| ||||||| ||||||||    
T  52910421 ttctccacacataatgtgtgtgaatctagtcactagactacctgat 52910376  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 11988964 - 11988928
Alignment:
Q  58 ttctccatacataatgtgtttgaatctagccactaga 94  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  11988964 ttctccacacataatgtgtgtgaatctagccactaga 11988928  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 37123631 - 37123676
Alignment:
Q  58 ttctccatacataatgtgtttgaatctagccactagattacctgat 103  Q
    ||||||| ||||||||||| ||||||||||||||||| ||| ||||    
T  37123631 ttctccacacataatgtgtgtgaatctagccactagactacttgat 37123676  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 8915639 - 8915675
Alignment:
Q  58 ttctccatacataatgtgtttgaatctagccactaga 94  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  8915639 ttctccataaataatgtgtgtgaatctagccactaga 8915675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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