View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15720_high_27 (Length: 266)

Name: NF15720_high_27
Description: NF15720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15720_high_27
NF15720_high_27
[»] chr2 (11 HSPs)
chr2 (139-249)||(22379309-22379419)
chr2 (95-251)||(22564747-22564901)
chr2 (93-215)||(3191848-3191970)
chr2 (93-244)||(3192084-3192234)
chr2 (139-249)||(27608070-27608181)
chr2 (139-249)||(24185480-24185590)
chr2 (139-249)||(34427010-34427120)
chr2 (139-249)||(10193994-10194104)
chr2 (139-205)||(33527726-33527792)
chr2 (161-249)||(17595988-17596076)
chr2 (169-220)||(41214211-41214262)
[»] scaffold0301 (1 HSPs)
scaffold0301 (139-249)||(4871-4981)
[»] chr8 (7 HSPs)
chr8 (139-250)||(19195917-19196029)
chr8 (140-221)||(18921129-18921210)
chr8 (140-221)||(31451593-31451674)
chr8 (149-241)||(14723381-14723473)
chr8 (148-245)||(12658174-12658271)
chr8 (152-241)||(28184370-28184459)
chr8 (140-221)||(14774833-14774914)
[»] chr4 (6 HSPs)
chr4 (139-250)||(11673465-11673576)
chr4 (139-241)||(55468934-55469035)
chr4 (185-251)||(9047442-9047508)
chr4 (139-249)||(43096099-43096209)
chr4 (140-221)||(8500221-8500302)
chr4 (148-221)||(27449226-27449299)
[»] chr3 (7 HSPs)
chr3 (139-248)||(9701512-9701621)
chr3 (139-250)||(27537919-27538030)
chr3 (139-241)||(31136838-31136940)
chr3 (148-241)||(7578623-7578716)
chr3 (139-249)||(22721112-22721222)
chr3 (139-246)||(14960381-14960488)
chr3 (139-178)||(29859829-29859868)
[»] chr7 (7 HSPs)
chr7 (139-249)||(10012861-10012971)
chr7 (148-247)||(37247092-37247191)
chr7 (139-241)||(19921174-19921276)
chr7 (139-188)||(36585735-36585784)
chr7 (140-248)||(45088707-45088814)
chr7 (140-221)||(580563-580644)
chr7 (140-234)||(28603681-28603775)
[»] chr1 (7 HSPs)
chr1 (139-249)||(34428453-34428563)
chr1 (139-249)||(19280566-19280676)
chr1 (140-234)||(22634787-22634881)
chr1 (139-249)||(45992405-45992515)
chr1 (158-243)||(48920966-48921051)
chr1 (142-221)||(40679178-40679257)
chr1 (168-249)||(46262205-46262286)
[»] chr6 (3 HSPs)
chr6 (93-180)||(34493388-34493476)
chr6 (139-241)||(7705815-7705917)
chr6 (1-38)||(17993980-17994017)
[»] scaffold0292 (1 HSPs)
scaffold0292 (140-234)||(21563-21657)
[»] scaffold0128 (1 HSPs)
scaffold0128 (140-234)||(23373-23467)
[»] scaffold0126 (1 HSPs)
scaffold0126 (139-249)||(43975-44085)
[»] scaffold0051 (1 HSPs)
scaffold0051 (140-219)||(62847-62926)
[»] scaffold0664 (1 HSPs)
scaffold0664 (167-249)||(2161-2243)
[»] scaffold0490 (1 HSPs)
scaffold0490 (140-221)||(10225-10306)
[»] chr5 (3 HSPs)
chr5 (139-192)||(4151869-4151922)
chr5 (139-178)||(23138450-23138489)
chr5 (139-178)||(26229294-26229333)


Alignment Details
Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 139 - 249
Target Start/End: Original strand, 22379309 - 22379419
Alignment:
Q  139 gagtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctcta 238  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||| ||| ||||||||||| ||||||||||||||| ||||||| |||| |||    
T  22379309 gagtacaagaaagaaaagggggactatgccaaaaccttttcagaaggtgttgaatctaaagttgggcattcccaacctattcctagtgtactctccccta 22379408  T
Q  239 atgaaatcagg 249  Q
    |||||||||||    
T  22379409 atgaaatcagg 22379419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 95 - 251
Target Start/End: Complemental strand, 22564901 - 22564747
Alignment:
Q  95 aaacagatgcagatgcatcatttcattagataaaacnnnnnnnngagtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatt 194  Q
    ||||||||||||||||||||||||||||||||||||         ||||||||||||||||||| || ||| |||||||||||||||||| ||||||||     
T  22564901 aaacagatgcagatgcatcatttcattagataaaacaaaaaaaa-agtacaagaaagaaaagggagaatataccaaaaccttttcaaaag-tgttaaatc 22564804  T
Q  195 taaagttgggctttcccaacctattccaagtgtacgctcctctaatgaaatcaggag 251  Q
    |||||||  || ||||||||||||||| ||||||| |||| ||||||||||||||||    
T  22564803 taaagttttgcattcccaacctattcctagtgtactctccactaatgaaatcaggag 22564747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 93 - 215
Target Start/End: Complemental strand, 3191970 - 3191848
Alignment:
Q  93 ataaacagatgcagatgcatcatttcattagataaaacnnnnnnnngagtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaa 192  Q
    ||||||||||||||||||||||||||||||||||||||        |||||||||||||| |||||  ||||| |||||||||||||||||| |||||||    
T  3191970 ataaacagatgcagatgcatcatttcattagataaaacaaaaaaaagagtacaagaaagagaagggaaactataccaaaaccttttcaaaagatgttaaa 3191871  T
Q  193 tttaaagttgggctttcccaacc 215  Q
    ||||||||| ||| || ||||||    
T  3191870 tttaaagttaggcatttccaacc 3191848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 93 - 244
Target Start/End: Complemental strand, 3192234 - 3192084
Alignment:
Q  93 ataaacagatgcagatgcatcatttcattagataaaacnnnnnnnngagtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaa 192  Q
    ||||| |||||| |||||||||||||||||||||||||        |||||||||||||||||||| |||||| || ||| |||||||||| ||||||||    
T  3192234 ataaatagatgctgatgcatcatttcattagataaaacaaaaaaa-gagtacaagaaagaaaagggagactatacctaaatcttttcaaaatgtgttaaa 3192136  T
Q  193 tttaaagttgggctttcccaacctattccaagtgtacgctcctctaatgaaa 244  Q
    | ||||||||||  |||||||| |||||  ||||||| ||||||||||||||    
T  3192135 tctaaagttgggtattcccaacatattcgtagtgtactctcctctaatgaaa 3192084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 139 - 249
Target Start/End: Complemental strand, 27608181 - 27608070
Alignment:
Q  139 gagtacaagaaagaaaagggggactattccaaaacctttt-caaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctct 237  Q
    ||||||||||||||||||||||||||| ||||||| |||| || |||||||| ||| ||||||||||| |||||| |||||||| ||||||| |||| ||    
T  27608181 gagtacaagaaagaaaagggggactatgccaaaacgtttttcagaaggtgttgaatctaaagttgggcattcccagcctattcctagtgtactctcccct 27608082  T
Q  238 aatgaaatcagg 249  Q
    ||||||||||||    
T  27608081 aatgaaatcagg 27608070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 139 - 249
Target Start/End: Original strand, 24185480 - 24185590
Alignment:
Q  139 gagtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctcta 238  Q
    ||||||||||||||||||||||||    |||||||||||||||||| |||||||  | || |||||| | ||||||||||||| | ||||| |||| |||    
T  24185480 gagtacaagaaagaaaagggggaccgaaccaaaaccttttcaaaagttgttaaacctgaaattgggcatacccaacctattcctaatgtactctccccta 24185579  T
Q  239 atgaaatcagg 249  Q
    || ||||||||    
T  24185580 ataaaatcagg 24185590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 139 - 249
Target Start/End: Original strand, 34427010 - 34427120
Alignment:
Q  139 gagtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctcta 238  Q
    |||||||| |||||||||  ||||||  ||||||| |||| |||||||||||||||| || |||||  ||||||||||||||| | ||||| ||||  ||    
T  34427010 gagtacaaaaaagaaaagaaggactaaaccaaaacttttttaaaaggtgttaaatttgaaattgggtattcccaacctattcctattgtactctccctta 34427109  T
Q  239 atgaaatcagg 249  Q
    |||||||||||    
T  34427110 atgaaatcagg 34427120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 249
Target Start/End: Original strand, 10193994 - 10194104
Alignment:
Q  139 gagtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctcta 238  Q
    ||||| || ||||||| || ||||||| ||||||||||||||||||||||||||| | || |||  | || | |||||||||| | ||||| |||| |||    
T  10193994 gagtaaaaaaaagaaacggaggactataccaaaaccttttcaaaaggtgttaaatctgaaattgaacatttctaacctattcctattgtactctccccta 10194093  T
Q  239 atgaaatcagg 249  Q
    |||||||||||    
T  10194094 atgaaatcagg 10194104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 33527792 - 33527726
Alignment:
Q  139 gagtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggc 205  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||||||  ||||| |||||||||||    
T  33527792 gagtacaaaaaagaaaagggagactataccaaaaccttttcaaaaggtagtaaatctaaagttgggc 33527726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 17595988 - 17596076
Alignment:
Q  161 actattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctctaatgaaatcagg 249  Q
    ||||| |||||||||||| |||||||||||||| | || || ||| |||||||| |||| | ||||||  ||  |||||||||||||||    
T  17595988 actataccaaaacctttttaaaaggtgttaaatctgaaattaggcattcccaacttatttccagtgtaatctattctaatgaaatcagg 17596076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 41214211 - 41214262
Alignment:
Q  169 aaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattc 220  Q
    ||||||||||||||||||| |  || ||||||||||| ||||||||||||||    
T  41214211 aaaaccttttcaaaaggtgatgtatctaaagttgggcattcccaacctattc 41214262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 139 - 249
Target Start/End: Original strand, 4871 - 4981
Alignment:
Q  139 gagtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctcta 238  Q
    ||||||||||||||||||||||||||| |||||||||||||| || ||||||||| ||||||| ||| |||||| |||||||| ||||||| |||| |||    
T  4871 gagtacaagaaagaaaagggggactatgccaaaaccttttcagaaagtgttaaatctaaagttaggcattcccagcctattcctagtgtactctccccta 4970  T
Q  239 atgaaatcagg 249  Q
    |||||||||||    
T  4971 atgaaatcagg 4981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 139 - 250
Target Start/End: Original strand, 19195917 - 19196029
Alignment:
Q  139 gagtacaagaaagaaaagggggactatt-ccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctct 237  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||| | ||| ||||||||||| | ||||||||||||| ||||||| |||||||    
T  19195917 gagtacaagaaagaaaagggggactaaagccaaaaccttttcaaaaggtggtgaatctaaagttgggcatacccaacctattcctagtgtactctcctct 19196016  T
Q  238 aatgaaatcagga 250  Q
    |||||||||||||    
T  19196017 aatgaaatcagga 19196029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 221
Target Start/End: Original strand, 18921129 - 18921210
Alignment:
Q  140 agtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattcc 221  Q
    ||||||||| |||||||||||||||  | ||||||||||||||||||||||||| |||| |||| | |||||||||||||||    
T  18921129 agtacaagatagaaaagggggactacgctaaaaccttttcaaaaggtgttaaatctaaaattggacattcccaacctattcc 18921210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 140 - 221
Target Start/End: Original strand, 31451593 - 31451674
Alignment:
Q  140 agtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattcc 221  Q
    ||||||||| |||||| ||||||||  | ||||||||||||||||||||||||| |||| |||| | |||||||||||||||    
T  31451593 agtacaagatagaaaatggggactaggctaaaaccttttcaaaaggtgttaaatctaaaattggccattcccaacctattcc 31451674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 241
Target Start/End: Complemental strand, 14723473 - 14723381
Alignment:
Q  149 aagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctctaatg 241  Q
    ||||||||||||||||| ||||||||||||| |||| |  ||||||||||||||||| | |||||||| |||  | ||||| |||||||||||    
T  14723473 aagaaaagggggactataccaaaaccttttcgaaagatagtaaatttaaagttgggcatacccaacctgttcttattgtactctcctctaatg 14723381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 245
Target Start/End: Original strand, 12658174 - 12658271
Alignment:
Q  148 aaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctctaatgaaat 245  Q
    |||||||||||||| ||| |||||||||||| |||||||||||||||| || |||| | || |||||| ||||| | | ||| |||| ||||||||||    
T  12658174 aaagaaaagggggattataccaaaacctttttaaaaggtgttaaatttgaatttggacattgccaacccattcctaatatactctcccctaatgaaat 12658271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 241
Target Start/End: Original strand, 28184370 - 28184459
Alignment:
Q  152 aaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctctaatg 241  Q
    ||||||||||| || ||||||  ||||||||||||   |||||||||||||||| | ||||||||||||| | ||||| |||||||||||    
T  28184370 aaaagggggaccataccaaaaatttttcaaaaggtagaaaatttaaagttgggcatacccaacctattcctattgtactctcctctaatg 28184459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 221
Target Start/End: Original strand, 14774833 - 14774914
Alignment:
Q  140 agtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattcc 221  Q
    ||||||| | |||||||||||||||  |||||||||||||||||||||  | |  ||||||||||| | |||||||||||||    
T  14774833 agtacaaaagagaaaagggggactaaaccaaaaccttttcaaaaggtgacatacctaaagttgggcatacccaacctattcc 14774914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 139 - 250
Target Start/End: Original strand, 11673465 - 11673576
Alignment:
Q  139 gagtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctcta 238  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||   ||| ||||||||||| ||||||||||||| | ||||||| ||||||||    
T  11673465 gagtacaagaaagaaaagggggaccgaaccaaaaccttttcaaaaggtgcagaatctaaagttgggcattcccaacctatttctagtgtactctcctcta 11673564  T
Q  239 atgaaatcagga 250  Q
    ||| | ||||||    
T  11673565 atggattcagga 11673576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 139 - 241
Target Start/End: Complemental strand, 55469035 - 55468934
Alignment:
Q  139 gagtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctcta 238  Q
    |||||||| ||||||||||||| |||| ||||||||||||||||||||  ||||| ||||||||||| | ||||| ||||||| | ||||| ||||||||    
T  55469035 gagtacaaaaaagaaaaggggg-ctataccaaaaccttttcaaaaggtagtaaatctaaagttgggcatacccaatctattcctattgtactctcctcta 55468937  T
Q  239 atg 241  Q
    |||    
T  55468936 atg 55468934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 9047442 - 9047508
Alignment:
Q  185 gtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctctaatgaaatcaggag 251  Q
    ||||||||| ||||||||||| ||| ||||||||||| ||||||| |||||||||||||||||||||    
T  9047442 gtgttaaatctaaagttgggcattctcaacctattcctagtgtactctcctctaatgaaatcaggag 9047508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 249
Target Start/End: Original strand, 43096099 - 43096209
Alignment:
Q  139 gagtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctcta 238  Q
    |||||||||||||||||||||||  |  ||||||||||||||| ||||||||||  | || |||||| | ||||||||||| |   ||||| |||| |||    
T  43096099 gagtacaagaaagaaaagggggatcaaaccaaaaccttttcaataggtgttaaacctgaaattgggcatacccaacctatttctgatgtactctccccta 43096198  T
Q  239 atgaaatcagg 249  Q
    |||||||||||    
T  43096199 atgaaatcagg 43096209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 8500302 - 8500221
Alignment:
Q  140 agtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattcc 221  Q
    ||||||| | |||||||||||| ||  |||| |||||||||||||||| ||||| ||||||||||| || ||||||||||||    
T  8500302 agtacaaaatagaaaagggggattagaccaagaccttttcaaaaggtggtaaatctaaagttgggcatttccaacctattcc 8500221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 27449299 - 27449226
Alignment:
Q  148 aaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattcc 221  Q
    |||||||||| |||| |  ||| |||||||||||||||||  | |||||||||||||| | |||||| ||||||    
T  27449299 aaagaaaaggaggacaacaccagaaccttttcaaaaggtggcatatttaaagttgggcatacccaacatattcc 27449226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 139 - 248
Target Start/End: Complemental strand, 9701621 - 9701512
Alignment:
Q  139 gagtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctcta 238  Q
    |||||||| |||||||||||||||||| |||||| |||||||||||||  ||||| |||| || ||| | ||||||||||||| | ||||| ||||||||    
T  9701621 gagtacaaaaaagaaaagggggactataccaaaatcttttcaaaaggtagtaaatctaaattttggcatacccaacctattcctattgtactctcctcta 9701522  T
Q  239 atgaaatcag 248  Q
    ||||| ||||    
T  9701521 atgaagtcag 9701512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 139 - 250
Target Start/End: Complemental strand, 27538030 - 27537919
Alignment:
Q  139 gagtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctcta 238  Q
    |||||||| | |||||||||||||||| ||||||||||||||||||||   |||||| || ||||||   ||||||||||||  ||||||| ||||||||    
T  27538030 gagtacaaaatagaaaagggggactataccaaaaccttttcaaaaggtacaaaatttgaaattgggcaagcccaacctattcttagtgtactctcctcta 27537931  T
Q  239 atgaaatcagga 250  Q
    ||||| ||||||    
T  27537930 atgaattcagga 27537919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 139 - 241
Target Start/End: Complemental strand, 31136940 - 31136838
Alignment:
Q  139 gagtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctcta 238  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||||||  ||||| ||||||||||| | || ||||| |||| | ||||| ||||||||    
T  31136940 gagtacaaaaaagaaaagggagactataccaaaaccttttcaaaaggtagtaaatctaaagttgggcatacctaacctgttcctattgtactctcctcta 31136841  T
Q  239 atg 241  Q
    |||    
T  31136840 atg 31136838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 241
Target Start/End: Complemental strand, 7578716 - 7578623
Alignment:
Q  148 aaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctctaatg 241  Q
    |||||||| ||||||||| ||||||||||||||||||||  ||||| ||||||||||| | ||||||||||||| | || || |||||||||||    
T  7578716 aaagaaaaaggggactataccaaaaccttttcaaaaggtagtaaatctaaagttgggcatacccaacctattcctattgcactctcctctaatg 7578623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 249
Target Start/End: Original strand, 22721112 - 22721222
Alignment:
Q  139 gagtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctcta 238  Q
    ||||||| |||||||||||||||| |  ||||||||||||||| ||||||||||  | || |||||| | |||||||||||||   ||||| |||| ||     
T  22721112 gagtacaggaaagaaaagggggaccaaaccaaaaccttttcaataggtgttaaacctgaaattgggcatacccaacctattcctgatgtactctcccctt 22721211  T
Q  239 atgaaatcagg 249  Q
    |||||||||||    
T  22721212 atgaaatcagg 22721222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 246
Target Start/End: Complemental strand, 14960488 - 14960381
Alignment:
Q  139 gagtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctcta 238  Q
    ||||||||||||||||||||||||    ||||||||||||||||||  ||||||  | || |||||| | ||||||||||||| | ||||| |||| |||    
T  14960488 gagtacaagaaagaaaagggggaccgaaccaaaaccttttcaaaagacgttaaacctgaaattgggcatacccaacctattcctaatgtactctccccta 14960389  T
Q  239 atgaaatc 246  Q
    || |||||    
T  14960388 ataaaatc 14960381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 178
Target Start/End: Complemental strand, 29859868 - 29859829
Alignment:
Q  139 gagtacaagaaagaaaagggggactattccaaaacctttt 178  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  29859868 gagtacaagaaagaaaagggggactaggccaaaacctttt 29859829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 139 - 249
Target Start/End: Complemental strand, 10012971 - 10012861
Alignment:
Q  139 gagtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctcta 238  Q
    ||||||||||||||||||||||||    ||||||||||||||||||||||||||  | || |||||| | ||||||||||||| | ||||| |||| |||    
T  10012971 gagtacaagaaagaaaagggggaccgaaccaaaaccttttcaaaaggtgttaaacctgaaattgggcatacccaacctattcctaatgtactctccccta 10012872  T
Q  239 atgaaatcagg 249  Q
    || ||||||||    
T  10012871 ataaaatcagg 10012861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 247
Target Start/End: Complemental strand, 37247191 - 37247092
Alignment:
Q  148 aaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctctaatgaaatca 247  Q
    ||||||||||| |||||| |||||||||||||||||| |||| ||| | || |||| | || |||||| ||||| ||||||  |||| ||||||||||||    
T  37247191 aaagaaaagggagactataccaaaaccttttcaaaagatgttgaatatgaaattggacatttccaaccaattcctagtgtattctcccctaatgaaatca 37247092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 241
Target Start/End: Complemental strand, 19921276 - 19921174
Alignment:
Q  139 gagtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctcta 238  Q
    |||||||| ||||||||||||||| |   |||||||||||||||||||   |||| ||||||||| | | |||||||| |||| | ||||| ||||||||    
T  19921276 gagtacaaaaaagaaaagggggaccaaatcaaaaccttttcaaaaggtagaaaatctaaagttggacatacccaacctgttcctattgtactctcctcta 19921177  T
Q  239 atg 241  Q
    |||    
T  19921176 atg 19921174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 36585784 - 36585735
Alignment:
Q  139 gagtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgt 188  Q
    |||||||| |||||||||||||||| | ||||||||||||||||||||||    
T  36585784 gagtacaataaagaaaagggggactgtaccaaaaccttttcaaaaggtgt 36585735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 248
Target Start/End: Complemental strand, 45088814 - 45088707
Alignment:
Q  140 agtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctctaa 239  Q
    ||||||||| || |||||||| |||| |||||||||||||||||| ||||||||  ||| |  ||| | ||||||||||| ||| ||||| ||||  |||    
T  45088814 agtacaagatagcaaaggggg-ctataccaaaaccttttcaaaagatgttaaatcgaaaatcaggcatacccaacctatttcaaatgtactctcccgtaa 45088716  T
Q  240 tgaaatcag 248  Q
    |||||||||    
T  45088715 tgaaatcag 45088707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 580644 - 580563
Alignment:
Q  140 agtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattcc 221  Q
    ||||||| | ||||||||||||| |  |||||||||||||||||||||  | |  ||||||||||| | |||||||||||||    
T  580644 agtacaaaagagaaaagggggaccaaaccaaaaccttttcaaaaggtgacatacctaaagttgggcatacccaacctattcc 580563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 234
Target Start/End: Complemental strand, 28603775 - 28603681
Alignment:
Q  140 agtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcc 234  Q
    ||||||||||||||| || ||| ||  || ||||||| |||||| | | |||||||||| |||| | ||||||||||||||| | ||||| ||||    
T  28603775 agtacaagaaagaaagggaggattaaacctaaaccttctcaaaatgagataaatttaaaattggacattcccaacctattcctaatgtactctcc 28603681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 139 - 249
Target Start/End: Complemental strand, 34428563 - 34428453
Alignment:
Q  139 gagtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctcta 238  Q
    |||||||| ||||||||||||||| || ||||||||||||||||||||   |||| ||||||||| | | |||||||| |||| | ||||| ||||||||    
T  34428563 gagtacaaaaaagaaaagggggaccataccaaaaccttttcaaaaggtagaaaatctaaagttggacatacccaacctgttcctattgtactctcctcta 34428464  T
Q  239 atgaaatcagg 249  Q
    ||| |||||||    
T  34428463 atggaatcagg 34428453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 139 - 249
Target Start/End: Original strand, 19280566 - 19280676
Alignment:
Q  139 gagtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctcta 238  Q
    |||||||||||||||||||||||| |  |||||||||||| |||||||||||||  | || |||||| | |||||| |||||| | ||||| |||| |||    
T  19280566 gagtacaagaaagaaaagggggaccaaaccaaaacctttttaaaaggtgttaaacctgaaattgggcatacccaacatattcctaatgtactctccccta 19280665  T
Q  239 atgaaatcagg 249  Q
    || ||||||||    
T  19280666 ataaaatcagg 19280676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 234
Target Start/End: Complemental strand, 22634881 - 22634787
Alignment:
Q  140 agtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcc 234  Q
    |||||||||  ||||||||||| ||  |||||||||||||| |||||| ||||| ||||||||||| ||||||||||||||| | ||||| ||||    
T  22634881 agtacaagatggaaaagggggattagaccaaaaccttttcagaaggtggtaaatctaaagttgggcattcccaacctattcctaatgtactctcc 22634787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 139 - 249
Target Start/End: Complemental strand, 45992515 - 45992405
Alignment:
Q  139 gagtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctcta 238  Q
    |||||||||||||||||| ||||| |  ||||||||||||||| ||||||||||| | || |||||| | |||||| ||||||   ||||| |||| |||    
T  45992515 gagtacaagaaagaaaagagggaccaaaccaaaaccttttcaataggtgttaaatctgaaattgggcatacccaacttattcctgatgtactctccccta 45992416  T
Q  239 atgaaatcagg 249  Q
    |||||||||||    
T  45992415 atgaaatcagg 45992405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 48921051 - 48920966
Alignment:
Q  158 gggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctctaatgaa 243  Q
    |||||||| ||||||||||||||||||||  ||||| ||||||||||| | |||||||| |||| | ||||| |||||||||||||    
T  48921051 gggactataccaaaaccttttcaaaaggtagtaaatctaaagttgggcatacccaacctgttcctattgtactctcctctaatgaa 48920966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 40679257 - 40679178
Alignment:
Q  142 tacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattcc 221  Q
    ||||| ||||||||||||||| |  ||||||||||||||||||||   |||| ||||||||||| | |||||||| ||||    
T  40679257 tacaaaaaagaaaagggggaccaaaccaaaaccttttcaaaaggtagaaaatctaaagttgggcatacccaacctgttcc 40679178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 249
Target Start/End: Original strand, 46262205 - 46262286
Alignment:
Q  168 caaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctctaatgaaatcagg 249  Q
    |||||||||||||||||||||| ||| | ||||||||| | |||||  |||||| | ||| | |||||||||| ||||||||    
T  46262205 caaaaccttttcaaaaggtgttgaatctgaagttgggcatacccaatatattcctaatgtcctctcctctaattaaatcagg 46262286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 180
Target Start/End: Original strand, 34493388 - 34493476
Alignment:
Q  93 ataaacagatgcagatgcatcatttcattagataaaac-nnnnnnnngagtacaagaaagaaaagggggactattccaaaaccttttca 180  Q
    ||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||| ||||||| ||||||||||||||    
T  34493388 ataaacagatgcagatgcatcatttcattagataaaacaaaaaaaaagagtacaagaaagaaaaggaggactataccaaaaccttttca 34493476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 241
Target Start/End: Complemental strand, 7705917 - 7705815
Alignment:
Q  139 gagtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctcta 238  Q
    |||||||| |||||||| ||||||||| |||||||||||| ||||  |  ||||||||||||||||| |  ||||||| |||  | ||||| ||||||||    
T  7705917 gagtacaaaaaagaaaatggggactataccaaaacctttttaaaatatagtaaatttaaagttgggcatatccaacctgttcttattgtactctcctcta 7705818  T
Q  239 atg 241  Q
    |||    
T  7705817 atg 7705815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 17994017 - 17993980
Alignment:
Q  1 cattacctacaagagaatatattcaaatatctaacatt 38  Q
    |||||||||||||| ||||||||||||||| |||||||    
T  17994017 cattacctacaagaaaatatattcaaatatttaacatt 17993980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0292 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0292
Description:

Target: scaffold0292; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 234
Target Start/End: Original strand, 21563 - 21657
Alignment:
Q  140 agtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcc 234  Q
    |||||||||  ||||||||||| ||  |||||||||||||| |||||| ||||| ||||||||||| ||||||||||||||| | ||||| ||||    
T  21563 agtacaagatggaaaagggggattagaccaaaaccttttcagaaggtggtaaatctaaagttgggcattcccaacctattcctaatgtactctcc 21657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 234
Target Start/End: Original strand, 23373 - 23467
Alignment:
Q  140 agtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcc 234  Q
    ||||||| |||||||| ||||| ||  ||||||||||||||||||||| ||||| ||||||||||  ||||||||||||||| | ||||| ||||    
T  23373 agtacaaaaaagaaaaaggggattagaccaaaaccttttcaaaaggtggtaaatctaaagttgggtattcccaacctattcctaatgtactctcc 23467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 139 - 249
Target Start/End: Complemental strand, 44085 - 43975
Alignment:
Q  139 gagtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctcta 238  Q
    |||||||||||||||||||||| |    ||||||||||||||||||||||||||  | || |||||| | ||||||||||||| | ||||| |||| |||    
T  44085 gagtacaagaaagaaaaggggggccgaaccaaaaccttttcaaaaggtgttaaacctgaaattgggcatacccaacctattcctaatgtactctccccta 43986  T
Q  239 atgaaatcagg 249  Q
    || ||||||||    
T  43985 ataaaatcagg 43975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 62926 - 62847
Alignment:
Q  140 agtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctatt 219  Q
    |||||||||||||||||||||| ||  |||| ||||||||| |||||  ||||| |||||||||| ||||||||||||||    
T  62926 agtacaagaaagaaaagggggaataaaccaagaccttttcataaggtagtaaatctaaagttgggttttcccaacctatt 62847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0664 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 249
Target Start/End: Complemental strand, 2243 - 2161
Alignment:
Q  167 ccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattccaagtgtacgctcctctaatgaaatcagg 249  Q
    ||||||||||||||||||||||||||  | || |||||| | ||||||||||||| | ||||| |||| ||||| ||||||||    
T  2243 ccaaaaccttttcaaaaggtgttaaacctgaaattgggcatacccaacctattcctaatgtactctcccctaataaaatcagg 2161  T

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Target: scaffold0490 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 10306 - 10225
Alignment:
Q  140 agtacaagaaagaaaaggggga-ctattccaaaaccttttcaaaaggtgttaaatttaaagttgggctttcccaacctattcc 221  Q
    |||||||||||||||||||||| |||  |||||||||||||||||||||  |||| | ||||||||| | |||||||||||||    
T  10306 agtacaagaaagaaaagggggatctag-ccaaaaccttttcaaaaggtgacaaatctgaagttgggcatacccaacctattcc 10225  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 4151922 - 4151869
Alignment:
Q  139 gagtacaagaaagaaaagggggactattccaaaaccttttcaaaaggtgttaaa 192  Q
    |||||||||||||||||||||||| |  ||||||||||||||| ||||||||||    
T  4151922 gagtacaagaaagaaaagggggaccaaaccaaaaccttttcaataggtgttaaa 4151869  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 178
Target Start/End: Original strand, 23138450 - 23138489
Alignment:
Q  139 gagtacaagaaagaaaagggggactattccaaaacctttt 178  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  23138450 gagtacaagaaagaaaagggggactaggccaaaacctttt 23138489  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 178
Target Start/End: Original strand, 26229294 - 26229333
Alignment:
Q  139 gagtacaagaaagaaaagggggactattccaaaacctttt 178  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  26229294 gagtacaagaaagaaaagggggactaggccaaaacctttt 26229333  T

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